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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTTCTAGCTTTATATGCTGCTAAACGAACTTCTGGTATTGTTGTCAACATTGGATTTAATGCCACATCTATTGTTCCTAgtaagtacttaacatcagtttaattcatgaatccttccatgattcagttgattgcacttatgttcatttactgagattatctctaaaaattgggaaattc...

Basic information

species Oryza sativa
transcript LOC_Os04g57210.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g57210.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G043862_T01 (Zea mays), 5'ss of exon 7
GCAGTTCTAGCTTTATATGCTGCTAAACGAACTTCTGGTATTGTTGTCAACATTGGATTTAATGCCACATCTATTGTTCCTAgtaagtacttaacatcagtttaattcatgaatccttccatgattcagttgattgcacttatgttcatttactgag-attatctctaaaaattgggaaattc----------------------------------------------------------------
||||||||| |||| |||||| ||||||| || ||||||||||||||  |||||||||| ||| | || ||| ||||||| |||||||| ||  |   |     |||  | | |  || || |  |    ||  ||  |||  || | | |   ||  |||| |  ||    ||||    | |                                                                
GCAGTTCTATCTTTGTATGCTTCTAAACGGACCTCTGGTATTGTTGTGCACATTGGATTCAATACGACTTCTGTTGTTCCCAgtaagtaattgtccataccgatattattaagttttttcaagtatttactg--tgtgctttcgtgcgtgtggggaacattagccatactgtttggcgtctgcatctttcagctgcacatatcaatgtcatttacattttaccattctgataatatgttttcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66925992|gb|CX112840.1|CX112840
EST:     TTCTGGTATTGTTGTCAACATTGGATTTAATGCCACATCTATTGTTCCTA                         TATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAG
genomic: TTCTGGTATTGTTGTCAACATTGGATTTAATGCCACATCTATTGTTCCTAgtaagtactt ... ctttcaacagTATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAG
EST: gi|29618213|gb|CB623225.1|CB623225
EST:     TTCTGGTATTGTTGTCAACATTGGATTTAATGCCACATCTATTGTTCCTA                         TATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAG
genomic: TTCTGGTATTGTTGTCAACATTGGATTTAATGCCACATCTATTGTTCCTAgtaagtactt ... ctttcaacagTATTTCAAGGTAGGGTAATGCATGAGATAGGTGTTGAAACTGTGGGGCAAG