1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGTTACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAgtaagtaattttattctgtacttttagatgccatctcagagggatttactaattgtctacatttgtacttattttag
species | Oryza sativa |
transcript | LOC_Os04g48820.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCA ATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGEST: gi|33794900|gb|CF323330.1|CF323330
genomic: GCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAgtaagtaatt ... cttattttagATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCG
EST: GCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCA ATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGEST: gi|8956451|gb|BE230254.1|BE230254
genomic: GCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAgtaagtaatt ... cttattttagATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCG
EST: GCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCA ATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCGEST: gi|8956439|gb|BE230242.1|BE230242
genomic: GCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAgtaagtaatt ... cttattttagATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCG
EST: GCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCA ATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCG
genomic: GCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAgtaagtaatt ... cttattttagATGCCCTTAGACAGAATTCTGCTAGAGACCGACGCACCGGATGCATTACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAATGGTGTCCAGCCTTGAAATTTTAGGCTGTTACTTTTCGTTGTCCGGCTTCCTTACAGGCATGAAATCCACGAAGGCAAAGAAAATGCTAAAATCAgtaagtaattttattctgtacttttagatgccatctcagagggatttactaattgtctacatttgtacttattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA