1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGgtatgtaatatgcagtggattttctttactgatatctgcaattatattccaaagaaacatattgactgatttatgctataattctttcatatatgtgcag
species | Oryza sativa |
transcript | LOC_Os04g48770.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGG ATGATGCAAAACATGCTTCTTCAAGAGGGTGEST: gi|58687667|gb|CK076354.1|CK076354
genomic: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGgtatgtaata ... atatgtgcagATGATGCAAAACATGCTTCTTCAAGAGGGTG
EST: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGG ATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAATEST: gi|88361848|gb|CI682012.1|CI682012
genomic: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGgtatgtaata ... atatgtgcagATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAAT
EST: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTANTGG ATGATGCAAAACATGEST: gi|58588357|gb|CF986665.1|CF986665
genomic: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGgtatgtaata ... atatgtgcagATGATGCAAAACATG
EST: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGG ATGATGCAAAACATGCTTCTTCAAGAGGGTGEST: gi|58595974|gb|CK006502.1|CK006502
genomic: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGgtatgtaata ... atatgtgcagATGATGCAAAACATGCTTCTTCAAGAGGGTG
EST: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGG ATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAATEST: gi|14191699|gb|AU183910.1|AU183910
genomic: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGgtatgtaata ... atatgtgcagATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAAT
EST: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGG ATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAAT
genomic: GTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGgtatgtaata ... atatgtgcagATGATGCAAAACATGCTTCTTCAAGAGGGTGACACTGTCCGTGTAAAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGCTGTTTGAGTTGCATAATGATGCAACTCAGCGGATTTCACACTGTGGTGTGCTGGAATTTGTGGCAGAAGAAGGCATGATCATCATGCCCTACTGGgtatgtaatatgcagtggattttctttactgatatctgcaattatattccaaagaaacatattgactgatttatgctataattctttcatatatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG