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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGGAAAACACCATATCCTTACAAAATGCGTATTCCTAGGAAGTGTACTGCAAAATGCTATGAGAACCGAGTATTACCTGCCCTTTTGAAAAAACATgtaagtacaatttgtgctttctatatttggaattttcagctagaaatgcttaataatgattgtttctactgcatttctgtccatgcag

Basic information

species Oryza sativa
transcript LOC_Os04g47520.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g47520.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G142664_T01 (Zea mays), 5'ss of exon 6
GAATGGGAAAACACCATATCCTTACAAAATGCGTATTCCTAGGAAGTGTACTGCAAAATGCTATGAGAACCGAGTATTACCTGCCCTTTTGAAAAAACATgtaagtacaatttgtgctttctatatttggaattttc-----agctagaaatgcttaataatgattgtttctactgc--atttctgtccatgcag------------
|||||| ||| | || |  || || || |||||||||||||| ||||||||| | |||||||| |||| |||||| || ||||| ||| | || || |||||||| |  | || |  ||| |  || ||  || ||      ||   || ||  | | | |  |        | | |  |  ||  | | ||               
GAATGGCAAACCGCCTTCGCCGTATAAGATGCGTATTCCTAGAAAGTGTACTTCTAAATGCTACGAGAGCCGAGTGTTGCCTGCTCTTCTAAAGAAGCATgtaagcattaatttttttttttgaatctgacatgtttcctgaagtctgacattttcagtgaaaaaaacgctcaattctgacatcaattcttgagcgttgacctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58608156|gb|CK036189.1|CK036189
EST:     CTGCAAAATGCTATGAGAACCGAGTATTACCTGCCCTTCTGAAAAAACAT                         GTTGTCCAGCTTACCAAATTTGACTACCGGGTT
genomic: CTGCAAAATGCTATGAGAACCGAGTATTACCTGCCCTTTTGAAAAAACATgtaagtacaa ... gtccatgcagGTTGTCCAGCTTACCAAATTTGACTACCGGGTT