1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CTTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAGgtaagagaatactatctgcttaatgaatagcagcagattacttcttgacacctgacactagtatctatcaacattttcag
species | Oryza sativa |
transcript | LOC_Os04g46620.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAG GTTGATAAACTTGGAAAGGATTCTCTTATAAACTGTGCGAAGACAAGCATGEST: gi|88301610|gb|CI597303.1|CI597303
genomic: TTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAGgtaagagaat ... acattttcagGTTGATAAACTTGGAAAGGATTCTCTTATAAACTGTGCGAAGACAAGCATG
EST: TTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAG GTTGATAAACTTGGAAAGGATTCTCTTATAEST: gi|58663765|gb|CK052451.1|CK052451
genomic: TTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAGgtaagagaat ... acattttcagGTTGATAAACTTGGAAAGGATTCTCTTATA
EST: TTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAG GTTGATAAACTTGGAAAGGATTCTCTTATAAACTGTGCGAAGACAAGCATGEST: gi|58690688|gb|CK079375.1|CK079375
genomic: TTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAGgtaagagaat ... acattttcagGTTGATAAACTTGGAAAGGATTCTCTTATAAACTGTGCGAAGACAAGCATG
EST: TTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAG GTTGATAAACTTGGAAAGGATTCTCTTATAAACTGTGCGAAGACAAGCATGEST: gi|29682947|gb|CB679222.1|CB679222
genomic: TTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAGgtaagagaat ... acattttcagGTTGATAAACTTGGAAAGGATTCTCTTATAAACTGTGCGAAGACAAGCATG
EST: TTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAG GTTGATAAACTTGGAAAGGATTCTCTTATAAACTGTGCGAAGACAAGCATG
genomic: TTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAGgtaagagaat ... acattttcagGTTGATAAACTTGGAAAGGATTCTCTTATAAACTGTGCGAAGACAAGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGCTATGCGTGAAGCTTGCAAATATGTTGAAGAAAAGTTGGCTGTCAAGgtaagagaatactatctgcttaatgaatagcagcagattacttcttgacacctgacactagtatctatcaacattttcag
- - - - - TGAAGC
- - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - AAGAAA