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CCCATATCCTACATTAGGAAACAAAAATATGCCTGAAGATAAGGTCAGAGATAAACAAAGAGAGATGCAGGATCTTGAAGCTACTCACAAGGAATTATCGgtaactgccatcgttcatttttaaagttccaaattactacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgttaatg...
species | Oryza sativa |
transcript | LOC_Os04g46450.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAAACAAAGAGAGATGCAGGATCTTGAAGCTACTCACAAGGAATTATCG GAATTGATTTCAAAGCGGTTGGTGGAAATTAAGAGATTACATGAAGAGAGAEST: gi|29680627|gb|CB676902.1|CB676902
genomic: ATAAACAAAGAGAGATGCAGGATCTTGAAGCTACTCACAAGGAATTATCGgtaactgcca ... tatcaaccagGAATTGATTTCAAAGCGGTTGGTGGAAATTAAGAGATTACATGAAGAGAGA
EST: ATAAACAAAGAGAGATGCAGGATCTTGAAGCTACTCACAAGGAATTATCG GAATTGATTTCAAAGCGGTTGGTGGAAATTAAGAGATTACATGAAGAGAGAEST: gi|29679837|gb|CB676112.1|CB676112
genomic: ATAAACAAAGAGAGATGCAGGATCTTGAAGCTACTCACAAGGAATTATCGgtaactgcca ... tatcaaccagGAATTGATTTCAAAGCGGTTGGTGGAAATTAAGAGATTACATGAAGAGAGA
EST: GAGATGCAGGATCTTGAAGCTACTCACAAGGAATTATCG GAATTGATTTCAAAGCGGTTGGTGGAAATTAAGAGATTACATGAAGAGAGAEST: gi|29641437|gb|CB646444.1|CB646444
genomic: GAGATGCAGGATCTTGAAGCTACTCACAAGGAATTATCGgtaactgcca ... tatcaaccagGAATTGATTTCAAAGCGGTTGGTGGAAATTAAGAGATTACATGAAGAGAGA
EST: CTCACAAGGAATTATCG GAATTGATTTCAAAGCGGTTGGTGGAAATTAAGAGATTACATGAAGAGAGA
genomic: CTCACAAGGAATTATCGgtaactgcca ... tatcaaccagGAATTGATTTCAAAGCGGTTGGTGGAAATTAAGAGATTACATGAAGAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCATATCCTACATTAGGAAACAAAAATATGCCTGAAGATAAGGTCAGAGATAAACAAAGAGAGATGCAGGATCTTGAAGCTACTCACAAGGAATTATCGgtaactgccatcgttcatttttaaagttccaaattactacttcctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgttaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctc