1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAGCAAAGTTATTCAGGAGAAAAAGGTGCTTGAGGTTCATATTGAGAAGGGAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttattttgtccatttatactagtatacatacttgcagccacatattcatccatccttgtgctaatgaatatctgtgcatgcactactttctttatctaatattttgcactgtgtgtttcatgctgttgcag
species | Oryza sativa |
transcript | LOC_Os04g46390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29645124|gb|CB650131.1|CB650131
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGAEST: gi|8858764|gb|AU096082.1|AU096082
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGA
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCT-ATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29678522|gb|CB674797.1|CB674797
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29644138|gb|CB649145.1|CB649145
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: AAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29643237|gb|CB648244.1|CB648244
genomic: AAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: AAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29663532|gb|CB659807.1|CB659807
genomic: AAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29643292|gb|CB648299.1|CB648299
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|27577316|gb|CB000011.1|CB000011
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29670817|gb|CB667092.1|CB667092
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|186893157|gb|FG124842.1|FG124842
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATACCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTEST: gi|218494336|gb|FG947221.1|FG947221
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29685950|gb|CB682225.1|CB682225
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29668765|gb|CB665040.1|CB665040
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29678573|gb|CB674848.1|CB674848
genomic: GCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|218503695|gb|FG958495.1|FG958495
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29670818|gb|CB667093.1|CB667093
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: CAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|218499562|gb|FG954739.1|FG954739
genomic: CAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|700654|gb|D46945.1|D46945
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCT-ATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29663531|gb|CB659806.1|CB659806
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAGGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCEST: gi|38476212|gb|CF960345.1|CF960345
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGC
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|29644137|gb|CB649144.1|CB649144
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACATEST: gi|25798325|gb|CA754286.1|CA754286
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
EST: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCT CCTGATACAGTGACAGGAGATATAGTATNTATCTTGCAAGTTAAGGTACAT
genomic: GAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttat ... gctgttgcagCCTGATACAGTGACAGGAGATATAGTATTTATCTTGCAAGTTAAGGTACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCAAAGTTATTCAGGAGAAAAAGGTGCTTGAGGTTCATATTGAGAAGGGAATGCAACATGGCCAAAAAATTGTATTCCAAGGTGAAGCTGATGAAGCTgtaagtttattttgtccatttatactagtatacatacttgcagccacatattcatccatccttgtgctaatgaatatctgtgcatgcactactttctttatctaatattttgcactgtgtgtttcatgctgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC