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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAACTTCTCTGTTCCAGTTCTCTGCTTTGCTAGAAATGTTGCATGCAATGTCAGGGGTGGTTTTTTCAAgtaaggatatccatctttgcctatgtgatctaagtaaattcattgccatgactcattgtagtcccagctaaatttaatatactccgttctgccacacaattttttttcttgttattgtgccatagaccaagtgtgaattattttgagatacagaaatttacgatttaattgacag

Basic information

species Oryza sativa
transcript LOC_Os04g44710.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g44710.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA13G31510.1 (Glycine max), 5'ss of exon 5
GCAAACTTCTCTGTTCCAGTTCTCTGCTTTGCTAGAAATGTTGCATGCAATGTCAGGGGTGGTTTTTTCAAgtaaggatatccatctttgcctatgtgat-ctaagtaaattcattgccatgactcattgtagtcccagctaaatttaatatactccgttctgccacacaattttttttcttgttattgtgccatagaccaagtgtgaattattttgagatacagaaatttacgatttaattgacag
|||| |    | || ||  |  | ||  |||| ||||||||||| |||||||| |||||||| || |||||||||| |       ||   |||| ||  |  ||| || | |  ||      || |     |     ||    || |    || |   ||||   ||| ||| |     |                                                                   
GCAAGCAATGCAGTCCCTTTCTTGTGTCTTGCAAGAAATGTTGCTTGCAATGTTAGGGGTGGCTTCTTCAAgtaagaa-------ctaaacctaagttttattaaatagactttttttttacacccgaacaaaaaggagggggatctcgcctatt---ttctctaacaaaatgtacaaacc------------------------------------------------------------------

upper sequence: LOC_Os04g44710.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv00s0370g00040.t01 (Vitis vinifera), 5'ss of exon 5
GCAAACTTCTCTGTTCCAGTTCTCTGCTTTGCTAGAAATGTTGCATGCAATGTCAGGGGTGGTTTTTTCAAgtaaggatatccatctttgcc-tatgtgatctaagtaaattcattgccatgactcattgtagtcccagctaaatttaatatactccgttc--tgccacacaattttttttcttgtta-ttgtgccatagaccaagtgtgaattattttgagatacagaaatttacgatttaattgacag
|||||     || || | || || ||  |||| ||||||||||||||||||||||| ||||||||||||||||||| |  |  |     | | ||  | |  |  |||  |  ||   ||||       | |  | ||  || ||    |  | || |||   ||       ||  |||||  |   | || | | ||      | ||   ||  |||||  |||  ||| |  |         | ||||
GCAAATAATGCTATTTCCGTCCTGTGTGTTGCAAGAAATGTTGCATGCAATGTCAGAGGTGGTTTTTTCAAgtaagaactttgagagaggtcatactttacatgtgtatgtctatg--catgcacacacgcacacacaagtacatcccttgaagtcagtttcatgttgactgataatttttggttccagttttcctatttgtttattgc--atccttttg--atatggaattacattggcactataacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58652932|gb|CK041612.1|CK041612
EST:     CTCTGCTTTGCTAGAAATGTTGCATGCAATGTCAGGGGTGGTTTTGTCGA                         AGAATTTGATGAGGTCCTTCTGCCACGGATAAGCGAGATTCACTACGAGGA
genomic: CTCTGCTTTGCTAGAAATGTTGCATGCAATGTCAGGGGTGGTTTTTTCAAgtaaggatat ... taattgacagAGAATTTGATGAGGTCCTTCTGCCACGGATAAGCGAGATTCACTACGAGGA