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ATTGATGCGATCATAGCAATGTCACTTCAACATGAAGATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcaccttgctgttcatctttactttctccatatccacagcgtgcctgtgtgaatgagggtcgggtctcatagttgttgctccattcgtcagtag...
species | Oryza sativa |
transcript | LOC_Os04g43220.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACA AGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTTEST: gi|29667533|gb|CB663808.1|CB663808
genomic: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcac ... tttttgttagAGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
EST: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACA AGAGGTCCAAGGGTATTGCGTTCEST: gi|29667534|gb|CB663809.1|CB663809
genomic: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcac ... tttttgttagAGAGGTCCAAGGGTATTGCGTTC
EST: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACA AGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTTEST: gi|88326296|gb|CI660118.1|CI660118
genomic: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcac ... tttttgttagAGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
EST: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACA AGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTTEST: gi|29642643|gb|CB647650.1|CB647650
genomic: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcac ... tttttgttagAGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
EST: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACA AGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTTEST: gi|88326319|gb|CI660142.1|CI660142
genomic: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcac ... tttttgttagAGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
EST: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACA AGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
genomic: ATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcac ... tttttgttagAGAGGTCCAAGGGTATTGCGTTCAACTGTTCCTCAGCATGCTAATAGGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATGCGATCATAGCAATGTCACTTCAACATGAAGATAATGCGCAGCCGACATCTAGAACTGCGAGGCGGTTCCAAAGCACTACAgtaagagcaccttgctgttcatctttactttctccatatccacagcgtgcctgtgtgaatgagggtcgggtctcatagttgttgctccattcgtcagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtcgg