1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCTgtaagtgactttctcctgttgttacttccattgctttacctgctgtgcttttcaccgaatatcatagctggttcatataagttgtcatccaacttgaata...
species | Oryza sativa |
transcript | LOC_Os04g43220.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCT AAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGCEST: gi|86427341|gb|CI072438.1|CI072438
genomic: AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCTgtaagtgact ... ttccttgcagAAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGC
EST: CTGCACATATTCAACCTAATATTGATCT AAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGCEST: gi|29667534|gb|CB663809.1|CB663809
genomic: CTGCACATATTCAACCTAATATTGATCTgtaagtgact ... ttccttgcagAAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGC
EST: AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCT AAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGCEST: gi|88326296|gb|CI660118.1|CI660118
genomic: AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCTgtaagtgact ... ttccttgcagAAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGC
EST: AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCT AAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGCEST: gi|29642643|gb|CB647650.1|CB647650
genomic: AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCTgtaagtgact ... ttccttgcagAAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGC
EST: AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCT AAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGCEST: gi|88326319|gb|CI660142.1|CI660142
genomic: AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCTgtaagtgact ... ttccttgcagAAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGC
EST: AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCT AAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGC
genomic: AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCTgtaagtgact ... ttccttgcagAAATGATTATGATGCACTGCTTGCATTAGATGAAAATAACCACCAGCATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCTCTTTCCAGATACCCTGCTGCACATATTCAACCTAATATTGATCTgtaagtgactttctcctgttgttacttccattgctttacctgctgtgcttttcaccgaatatcatagctggttcatataagttgtcatccaacttgaata
- - - - - - - - - - TGCTGC