1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TATTTCAAGTGATGGTGTTTGGGATGCCTTGACTGTGGATACGGCTTTTAGTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAAgttagttcaccacctcattgtgtgctaccagaaacctcaaattatatccttatattctgcttcttttgtag
species | Oryza sativa |
transcript | LOC_Os04g37660.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAA GAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATTEST: gi|88372968|gb|CI640419.1|CI640419
genomic: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAAgttagttcac ... tcttttgtagGAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATT
EST: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAA GAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATTEST: gi|88333501|gb|CI656573.1|CI656573
genomic: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAAgttagttcac ... tcttttgtagGAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATT
EST: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATCGTCAAA GAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATTEST: gi|27547836|gb|CA765984.2|CA765984
genomic: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAAgttagttcac ... tcttttgtagGAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATT
EST: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAA GAAGCAATTGCATCAAAAGGATTGAGAGATGATAGGACTTGTATTGTCATTEST: gi|88296263|gb|CI667653.1|CI667653
genomic: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAAgttagttcac ... tcttttgtagGAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATT
EST: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAA GAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATTEST: gi|58605846|gb|CK033879.1|CK033879
genomic: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAAgttagttcac ... tcttttgtagGAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATT
EST: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAA GAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATT
genomic: GTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAAgttagttcac ... tcttttgtagGAAGCAATTGCATCAAAAGGATTGAGAGATGATACGACTTGTATTGTCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTTCAAGTGATGGTGTTTGGGATGCCTTGACTGTGGATACGGCTTTTAGTTGTGCACGAGGGCTTCCTCCAGAAGCTGCAGCGGATCAAATTGTCAAAgttagttcaccacctcattgtgtgctaccagaaacctcaaattatatccttatattctgcttcttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG