1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAATTACCCGAGACACATTATTAATGAGGATGAAGAAATCACAATGGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAAgtaagtttgtattgtactgtttttggttacttgaagtcttgaagaacattattcatcttacctgtatacattcttgcag
species | Oryza sativa |
transcript | LOC_Os04g30760.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAA GCTGCTACAAAAATAAEST: gi|30227133|gb|CB965025.1|CB965025
genomic: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAAgtaagtttgt ... attcttgcagGCTGCTACAAAAATAA
EST: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAA GCTGCTACAAAAATAAEST: gi|30227817|gb|CB965709.1|CB965709
genomic: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAAgtaagtttgt ... attcttgcagGCTGCTACAAAAATAA
EST: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAA GCTGCTACAAAAATAAEST: gi|23512833|gb|BU672855.1|BU672855
genomic: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAAgtaagtttgt ... attcttgcagGCTGCTACAAAAATAA
EST: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAA GCTGCTACAAAAATAAEST: gi|30226632|gb|CB964524.1|CB964524
genomic: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAAgtaagtttgt ... attcttgcagGCTGCTACAAAAATAA
EST: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAA GCTGCTACAAAAATAAEST: gi|87006512|gb|CI294895.1|CI294895
genomic: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAAgtaagtttgt ... attcttgcagGCTGCTACAAAAATAA
EST: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAA GCTGCTACAAAAATAATGATGAAGAAGAAAAAGEST: gi|30228838|gb|CB966729.1|CB966729
genomic: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAAgtaagtttgt ... attcttgcagGCTGCTACAAAAATAATGATGAAGAAGAAAAAG
EST: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAA GCTGCTACAAAAATAA
genomic: GGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAAgtaagtttgt ... attcttgcagGCTGCTACAAAAATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTACCCGAGACACATTATTAATGAGGATGAAGAAATCACAATGGCAAGACGTAATTGACCTGAATCTTACTGGTGTTTTCCTCTGTACACAAgtaagtttgtattgtactgtttttggttacttgaagtcttgaagaacattattcatcttacctgtatacattcttgcag
- - - - - - - - - - - - - - - - - - - - - - - GCAAGA