1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCCAGTGCTATTTCAGCAGCTGCTGTGAAGTCGAAACTCCTTGCAAAGCATGAGGAATATCAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAGgtattttataaccaatgactacagtaatgcttcaatacatacaagtagcatatacttcctgtgagatgcatgtatatatgaccataaagtatgcattacctctgttttttccctcatctaatgaagatcacattccgtgcag
species | Oryza sativa |
transcript | LOC_Os04g01970.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGAGGAATATCAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAG CTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTGEST: gi|58609944|gb|CK037977.1|CK037977
genomic: ATGAGGAATATCAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAGgtattttata ... ttccgtgcagCTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTG
EST: ATGAGGAATATCAAATCCAGCGACTAACTGCACTTGTGATTGATAAACAG CTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTGEST: gi|87027720|gb|CI274284.1|CI274284
genomic: ATGAGGAATATCAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAGgtattttata ... ttccgtgcagCTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTG
EST: ATGAGGAATATCAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAG CTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTGEST: gi|88231818|gb|CI231667.1|CI231667
genomic: ATGAGGAATATCAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAGgtattttata ... ttccgtgcagCTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTG
EST: CAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAG CTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTGEST: gi|89188942|gb|CI048678.1|CI048678
genomic: CAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAGgtattttata ... ttccgtgcagCTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTG
EST: ATGAGGAATATCAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAG CTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTG
genomic: ATGAGGAATATCAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAGgtattttata ... ttccgtgcagCTCCACAAGATGCAAGCGAAAATGTCAGTTTTCACTGAAGCAGATAATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCAGTGCTATTTCAGCAGCTGCTGTGAAGTCGAAACTCCTTGCAAAGCATGAGGAATATCAAATCCAGCGACTAGCTGCACTTGTGATTGATAAACAGgtattttataaccaatgactacagtaatgcttcaatacatacaagtagcatatacttcctgtgagatgcatgtatatatgaccataaagtatgcattacctctgttttttccctcatctaatgaagatcacattccgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC