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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGGCAGAAGCTGGGTTGATTTCCAGCAAGCTTTCGAGATCTGATATGAACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATGgtgattctctaacccccaacgcaccccacaccaaacacccacacacccacacaacgacacacacctctctaccacaagtgcaaccaaaacagtcctaataatttgtccttactgcag

Basic information

species Oryza sativa
transcript LOC_Os03g64400.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g64400.4 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G077222_T01 (Zea mays), 5'ss of exon 6
GCTTGGCAGAAGCTGGGTTGATTTCCAGCAAGCTTTCGAGATCTGATATGAACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATGgtgattctctaaccccca-acgcaccccacaccaaacacccacacacccacacaacgacacacacctctctaccacaagtgcaaccaaaacagtcctaataatttgtccttactgcag
|| | ||||||||||| |||||||| ||||||||||| ||||||||||||||  | ||   ||||||| |  |    ||||  |||||||| || ||  ||||||  | |  |      | |  || | |  || || | |   ||  | |  ||   ||     ||  |   ||                                           
GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatatttcaattgtatgtgcctctc-tcatacgctctatcaaactcctaat--cagttgtcttcccttcag------------------------------------------

upper sequence: LOC_Os03g64400.4 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G077222_T02 (Zea mays), 5'ss of exon 6
GCTTGGCAGAAGCTGGGTTGATTTCCAGCAAGCTTTCGAGATCTGATATGAACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATGgtgattctctaaccccca-acgcaccccacaccaaacacccacacacccacacaacgacacacacctctctaccacaagtgcaaccaaaacagtcctaataatttgtccttactgcag
      |||||||||| |||||||| ||||||||||| ||||||||||||||  | ||   ||||||| |  |    ||||  |||||||| || ||  ||||||  | |  |      | |  || | |  || || | |   ||  | |  ||   ||     ||  |   ||                                           
------CAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAGgtgatgatatttcaattgtatgtgcctctc-tcatacgctctatcaaactcctaat--cagttgtcttcccttcag------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689870|gb|CK078557.1|CK078557
EST:     AACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATG                         TCCTGTGTCACGTCAAGACCTCGTGAGTTGGAAGATGGCTTCGGATAAAAG
genomic: AACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATGgtgattctct ... cttactgcagTCCTGTGTCACGTCAAGACCTCGTGAGTTGGAAGATGGCTTTGGATAAAAG
EST: gi|58669049|gb|CK057735.1|CK057735
EST:     AACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATG                         TCCTGTGTCACGTCAAGACCTCGTGAGTTGGAAGATGGCTTTGGATAAAAG
genomic: AACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATGgtgattctct ... cttactgcagTCCTGTGTCACGTCAAGACCTCGTGAGTTGGAAGATGGCTTTGGATAAAAG
EST: gi|58611882|gb|CK039594.1|CK039594
EST:     AACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATG                         TCCTGTGTCAC
genomic: AACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATGgtgattctct ... cttactgcagTCCTGTGTCAC