1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAgtaagtatttctcgtttttattaacaagtaaatctttgctttatagtgtaacattaggcattttcactttgtggccacaaaatcgaccag
species | Oryza sativa |
transcript | LOC_Os03g64219.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAA GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGEST: gi|88840178|gb|CI079632.1|CI079632
genomic: GCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAgtaagtattt ... aatcgaccagGAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG
EST: ATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAA GAACGGGTAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGEST: gi|33681506|gb|CF309745.1|CF309745
genomic: ATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAgtaagtattt ... aatcgaccagGAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG
EST: AAAAGATGATAAA GAACGGGGAGTGGGGTGACCACGTTTACATTGCAGGCTGCTGCAGACTCGEST: gi|87019141|gb|CI297342.1|CI297342
genomic: AAAAGATGATAAAgtaagtattt ... aatcgaccagGAACGGGGAGTGGGGTGACCACG-TTACATTGCAGGCTGCTGCAGACTCG
EST: GCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAA GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGEST: gi|86418296|gb|CI032505.1|CI032505
genomic: GCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAgtaagtattt ... aatcgaccagGAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG
EST: GCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAA GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGEST: gi|88840177|gb|CI079631.1|CI079631
genomic: GCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAgtaagtattt ... aatcgaccagGAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG
EST: AAAAAAGATGATAAA GAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG
genomic: AAAAAAGATGATAAAgtaagtattt ... aatcgaccagGAACGGGGAGTGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGAGTCTTATCCGGAAATTTATGCAGGATATGTCCCTATGGATTATAGGGAATATCTAAAAAAGATGATAAAgtaagtatttctcgtttttattaacaagtaaatctttgctttatagtgtaacattaggcattttcactttgtggccacaaaatcgaccag
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