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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGGTTTCATTTTCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttttagtctcctctctgcttgtctgcttttttgcattagacattagacatcaaatatgattatttgttcaagtgaagtgatgattattctctgggcaatccag

Basic information

species Oryza sativa
transcript LOC_Os03g64020.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g64020.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AC203966.5_FGT002 (Zea mays), 5'ss of exon 7
TTTCGGTTTCATTTTCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttttagtctcctctctgcttgtctgcttttttgcattagacattagacatcaaatatgattatttgttcaagtgaagtgatga--ttattctctgggcaatccag-----
|||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||  | ||||| || |||||  | ||||| ||||||||||||||||      |     || | ||     |    || |||     |||   |  | ||  ||   ||          |||  || ||||||  ||||| |   |   ||| ||     
TTTCGGATTCATTTTCACATGGTTTGCTGCTTTGCCCCTAATATTGTTCTTAGCACAGTCATTGACTAAGGCTATAGTCCAGGACTTTTTAATCCTCAAGgtatg-----tgccggccgcgctatccattg--ttctttatggcagagtatgtatattgaagtaga----------aaggaaactgatgagtttatttttctgaggatctaggggcc

upper sequence: LOC_Os03g64020.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G896082_T03 (Zea mays), 5'ss of exon 8
TTTCGGTTTCATTTTCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttttagtctcctctctgcttgtctgcttttttgcattagacattagacatcaaatatgattatttgttcaagtgaagtgatgatt--attctctgggcaatccag
|||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||||  | ||||| || |||||  | || || |||||||| |||||||   | || |||    |     ||||     | |||     ||| | |  | ||  ||   ||          | |  || ||||||||  ||| |   ||  |||   
TTTCGGATTCATTTTCACATGGTTTGCTGCTTTGCCCCTAATATTGTTCTTAGCGCAGTCATTGACTAAGGCTATAGTCCAGGATTTTTTAATCCTTAAGgtatg--tgttggtcgtgccatccattgt-----tctttatgacagagaatgtatattgaagtaga----------agggaaactgatgattttatttttctggggatcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86884857|gb|CI314433.1|CI314433
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|88518624|gb|CI446278.1|CI446278
EST:     CTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: CTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|86255079|gb|CI061984.1|CI061984
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|88844776|gb|CI021351.1|CI021351
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|38475301|gb|CF959434.1|CF959434
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|86882127|gb|CI325663.1|CI325663
EST:     TAGCACAGTCGATAAATAATGCCATAGTGAAAGACTTGTTAATCCTCAAG                         GGCCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|88965747|gb|CI006624.1|CI006624
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|86597983|gb|CI278373.1|CI278373
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|86865586|gb|CI330994.1|CI330994
EST:     TAGCACACTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|3763560|gb|AU030312.1|AU030312
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|86861130|gb|CI326610.1|CI326610
EST:     TAGCACAGTCGATAACTAATGCCATAATGAACGACTTCTTAATCCTC-AG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|58589439|gb|CF987747.1|CF987747
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGGCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|33821393|gb|CF336509.1|CF336509
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|86890101|gb|CI320090.1|CI320090
EST:     TAGCACAGTCGATAACTAATCCCATAGTGAACGACTTCTTAATCCTC-AG                         GGGCCATGTCCGAATTGTGGCTCTGAAAACCTTTCCTTCTTC-GGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|88904001|gb|CI006234.1|CI006234
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|86862773|gb|CI331653.1|CI331653
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|88319547|gb|CI518391.1|CI518391
EST:     ACGACTTCTTAATCCTCAAGG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTAT
genomic: ACGACTTCTTAATCCTCAA-Ggtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTAT
EST: gi|86896793|gb|CI317331.1|CI317331
EST:     AGGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: A-GCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|88995899|gb|CI037190.1|CI037190
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|58030632|gb|CX728175.1|CX728175
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTTTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|33679890|gb|CF308129.1|CF308129
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|38475842|gb|CF959975.1|CF959975
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|29687940|gb|CB684215.1|CB684215
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|88484444|gb|CI421715.1|CI421715
EST:     GACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: GACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|33822703|gb|CF337158.1|CF337158
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|29682412|gb|CB678687.1|CB678687
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|29684429|gb|CB680704.1|CB680704
EST:     TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAG                         GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
genomic: TAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATC
EST: gi|86860511|gb|CI323436.1|CI323436
EST:     GCACAGTCGATAACTAATGCCATAGTGGACGACTTCTTAATCCTCAAG                         GGGCAATGTCCGGAATTGTGGCGCTGAAAACCTTTCCTTCTTC-GGACTAT
genomic: GCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGgtattatttt ... ggcaatccagGGGCCATGTCC-GAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTAT