1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATGACTCGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattctgtaaataattgccagccttttgtcacctcttgcatatttagtttttaagcaaccgagcatgcaaatcattactacactgagttactactgaattattcagtacaaagattgatccttgaaacgcacaaatatcttacctgctgggattgttgtgcag
species | Oryza sativa |
transcript | LOC_Os03g63710.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAG GCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAGEST: gi|38476645|gb|CF960778.1|CF960778
genomic: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattc ... tgttgtgcagGCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAG
EST: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAG GCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAGEST: gi|86592535|gb|CI253216.1|CI253216
genomic: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattc ... tgttgtgcagGCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAG
EST: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAG GCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAGEST: gi|66922735|gb|CX109583.1|CX109583
genomic: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattc ... tgttgtgcagGCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAG
EST: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAG GCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAGEST: gi|29645174|gb|CB650181.1|CB650181
genomic: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattc ... tgttgtgcagGCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAG
EST: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAG GCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAGEST: gi|86497697|gb|CI140330.1|CI140330
genomic: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattc ... tgttgtgcagGCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAG
EST: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAG GCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAGEST: gi|86859205|gb|CI277095.1|CI277095
genomic: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattc ... tgttgtgcagGCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAG
EST: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAG GCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAGEST: gi|88221223|gb|CI221179.1|CI221179
genomic: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattc ... tgttgtgcagGCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAG
EST: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAG GCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAGEST: gi|29677840|gb|CB674115.1|CB674115
genomic: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattc ... tgttgtgcagGCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAG
EST: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAG GCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAG
genomic: CGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattc ... tgttgtgcagGCATCTCAAGATCTGTCTTCCCTCAAGAATATGGCTGGAGAAACTGGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGTCCATTTCAAGTGCTGATCTTTTTGGCCGCCGCGACATGGATGACTCGAATCTGGATTTAAGTGCTGCGGATCTCATCAACAGAATATCATTCCAGgtagttattctgtaaataattgccagccttttgtcacctcttgcatatttagtttttaagcaaccgagcatgcaaatcattactacactgagttactactgaattattcagtacaaagattgatccttgaaacgcacaaatatcttacctgctgggattgttgtgcag
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