1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGGTTTTTATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttccttcttgatgatctgtttcaatgctctttagccaattttatacgttttctgttatctgctgaaagtattaggagtagactgcattttgtcaagtcagagcattgcatgacatcactggtctaacttggttttgttcattttcag
species | Oryza sativa |
transcript | LOC_Os03g63090.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACEST: gi|218494510|gb|FG957958.1|FG957958
genomic: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
EST: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACEST: gi|87036117|gb|CI189564.1|CI189564
genomic: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
EST: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACEST: gi|218502090|gb|FG953891.1|FG953891
genomic: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
EST: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTAACACTGTGAGGACATGCACEST: gi|33683666|gb|CF311905.1|CF311905
genomic: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
EST: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACEST: gi|86490261|gb|CI132894.1|CI132894
genomic: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
EST: GCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACEST: gi|117226003|gb|CT845644.1|CT845644
genomic: GCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
EST: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAG GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
genomic: TATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttcc ... tcattttcagGGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGGCAGATGAGCTAGAAAATATTCTTGCAAAGAAGTTTCTTAGGTTTTTATCAATGAGAGCAGAAGCATTCCAAGTGCTGAGGAGAAAACCAGTTCAGgtggttttccttcttgatgatctgtttcaatgctctttagccaattttatacgttttctgttatctgctgaaagtattaggagtagactgcattttgtcaagtcagagcattgcatgacatcactggtctaacttggttttgttcattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA