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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtatacctttcgactatattctgttgaagttataggctgtctatataccctagaagttaattagccttctctctttcctctttag

Basic information

species Oryza sativa
transcript LOC_Os03g63020.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g63020.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G045241_T07 (Zea mays), 5'ss of exon 2
GCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgta-tacctttcgactatattctgttgaagttataggctgtctatataccctagaagttaattagccttctctctttcctctttag--
|||||| | |||  ||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| || |||||  | |||||||||| |   | | |   |||||   ||| | ||||    | ||| | |  |    ||  |||||||  || |  |||   | | |    
GCTTTCCCTGAAAGGGATATAAGGAACTTTATGGTCCAGATACTGCAAGGTCTTGCATATATGCATAATAATGGGTATTTTCACCGTGATTTAAAACCTGgtaatgtgtcttgttgatattacattggaattat--cttatctttctttctgtcaaaataattagtttttttccttctatttgtgcag

upper sequence: LOC_Os03g63020.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT4G13020.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTTTCTCAGAAGAGGAGATACGGAACTTTATGGTGCAGATACTGCAAGGTCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtatacctttcgactatattctgttgaagttataggctgtctatataccctagaagt-taattagccttctctctttcctctttag--
 |||| || ||||  || ||| | |  ||||||   ||||| |||||||| || ||| | |||||||| ||||||||||||||||| |||||||||||||||||   ||   ||| | |  |||   | ||  |    || |     |  |  | || | || | |    | | ||   | | |    
CCTTTTTCTGAAGGAGAAATAAGAAGTTTTATGTCTCAGATGCTGCAAGGGCTCGCACACATGCATAAAAACGGTTATTTCCATCGAGACCTGAAACCTGgtatgttttggtactttgtattgtattaattg-aaatggttttcgctctttgaatgtcttataaacaagttttgttctgtttctgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25798660|gb|CA754621.1|CA754621
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG                         AAAATCTGTTGGTGACAGATGGC
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGC
EST: gi|58694135|gb|CK082822.1|CK082822
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG                         AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: gi|58656490|gb|CK045170.1|CK045170
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG                         AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: gi|58692426|gb|CK081113.1|CK081113
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG                         AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: gi|58675001|gb|CK063688.1|CK063688
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG                         AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: gi|117226423|gb|CT848659.1|CT848659
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG                         AAAATCTGTTGGTGACAGATGGCACTGT-AAAATTGCTGAC
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGAC
EST: gi|86848584|gb|CI293908.1|CI293908
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG                         AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: gi|29656191|gb|CB652466.1|CB652466
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG                         AAAATCTGTTG
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTG
EST: gi|33381171|gb|CF196514.1|CF196514
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG                         AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: gi|29613119|gb|CB618132.1|CB618132
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTG                         AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGACTTTGGGTTGG
EST: gi|29663526|gb|CB659801.1|CB659801
EST:     TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAAACTG                         AAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGAC
genomic: TCTTGCATATATGCATAACAACGGTTATTTCCATCGTGACCTGAAACCTGgtataccttt ... tcctctttagAAAATCTGTTGGTGACAGATGGCACTGTTAAAATTGCTGAC