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ACTCCAACACCTCAAATGGCATCAGTACCAGCACCTGCTCCCCCTGATGCTCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaagaaccgctctactttattactaagtagtatgcatgcgggttgttttcttctgtgaggttactggctcagttacaagggccaagatatagtt...
species | Oryza sativa |
transcript | LOC_Os03g62640.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACA-GGGATGGTAGATGAAGCACAGAAAGEST: gi|29665629|gb|CB661904.1|CB661904
genomic: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAG
EST: TGAAGAGCTTG GTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGEST: gi|29623911|gb|CB628922.1|CB628922
genomic: TGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGG
EST: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGEST: gi|29661287|gb|CB657562.1|CB657562
genomic: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGG
EST: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTAGATGAAGCACAGAAAGEST: gi|29630312|gb|CB635321.1|CB635321
genomic: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAG
EST: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGEST: gi|84117476|gb|CD151243.1|CD151243
genomic: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGG
EST: TCGCACTCTAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGEST: gi|454535|gb|D28304.1|D28304
genomic: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGG
EST: GATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGEST: gi|29629756|gb|CB634765.1|CB634765
genomic: GATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGG
EST: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGEST: gi|29664073|gb|CB660348.1|CB660348
genomic: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGG
EST: AAGATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGEST: gi|29664072|gb|CB660347.1|CB660347
genomic: AAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGG
EST: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTEST: gi|29661288|gb|CB657563.1|CB657563
genomic: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGT
EST: GATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGEST: gi|29639321|gb|CB644330.1|CB644330
genomic: GATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGG
EST: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACA-GGGATGGTAGATGEST: gi|29674744|gb|CB671019.1|CB671019
genomic: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATG
EST: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGGEST: gi|29678347|gb|CB674622.1|CB674622
genomic: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGATGAAGCACAGAAAGTTATGGAAGAAGCAGAGG
EST: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTG GTGAACAAGGGATGGTAGAT
genomic: TCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaag ... cttttgttagGTGAACAAGGGATGGTAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCCAACACCTCAAATGGCATCAGTACCAGCACCTGCTCCCCCTGATGCTCGCACTCAAGAAATGATCAACGAAAAGATAAAGAAAGCTGAAGAGCTTGgtatgaaaagaaccgctctactttattactaagtagtatgcatgcgggttgttttcttctgtgaggttactggctcagttacaagggccaagatatagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT