1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGGGCTAGTGGGGTATGGGCTTTCCAGGCTCTTTCATGCTGGTGGGACGGAAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAGgttttttgttgattttgttgaatcagttatgtgcacttacagtttctaattgttgttagtaaccaatatctggacttacactgcag
species | Oryza sativa |
transcript | LOC_Os03g59040.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAG AAAATCAATATAATTACGGATTATTTGGAGGACATAAACGAGATACCAAAGEST: gi|33683121|gb|CF311360.1|CF311360
genomic: AAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAGgttttttgtt ... tacactgcagAAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAG
EST: AACATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAC AAAATCAATATAATTACGGATTATTTGGAGGACATAAACGAGATACCAAAGEST: gi|29673560|gb|CB669835.1|CB669835
genomic: AAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAGgttttttgtt ... tacactgcagAAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAG
EST: AAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAG AAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAG
genomic: AAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAGgttttttgtt ... tacactgcagAAAATCAATATAATTAGGGATTATTTGGAGGACATAAACGAGATACCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCTAGTGGGGTATGGGCTTTCCAGGCTCTTTCATGCTGGTGGGACGGAAGATCTGGCTTCAGATTCACTTTCAAATTCAATGGGCTTGTTTCTGCAGgttttttgttgattttgttgaatcagttatgtgcacttacagtttctaattgttgttagtaaccaatatctggacttacactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG