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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCTGTTAGGGATGATTTTGTTTTCTCAGTGGAAGATAAAGATGTTACAGAGGTAGATTCCGTATTAACCACTGGTGAAGTGTTAGATTTGATACAGgtaactgatttttttcccatgtcctgtcttttgatatgcatttaaaaaactatgagaagcttataccattttcatgcttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os03g53750.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g53750.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G171998_T01 (Zea mays), 5'ss of exon 6
AGAAGCTGTTAGGGATGATTTTGTTTTCTCAGTGGAAGATAAAGATGTTACAGAGGTAGATTCCGTATTAACCACTGGTGAAGTGTTAGATTTGATACAGgtaactgatt--tttttcccatgtcctgtcttttgatatgcatttaaaaaactatg-agaagcttat-accattttcatgcttgtgcag
||| || ||  ||||||||||   ||||||||| || | |||||| ||||||||||| ||||| ||| |||| ||||||||||||||||| |||||||||||  ||  ||  || ||    |  | |||  ||||   || |||| |||||| | | |||  ||||| |  |||| |||  || || ||
AGAGGCCGTCCGGGATGATTTCACTTTCTCAGTAGATGGTAAAGAAGTTACAGAGGTGGATTCAGTACTAACAACTGGTGAAGTGTTAGACTTGATACAGgttgctacttggttctttttcttgcttgtggtttg---tggatttgaaaaacaagggagacacttattatgatttgcatatttctgtag

upper sequence: LOC_Os03g53750.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G456690_T01 (Zea mays), 5'ss of exon 6
AGAAGCTGTTAGGGATGATTTTGTTTTCTCAGTGGAAGATAAAGATGTTACAGAGGTAGATTCCGTATTAACCACTGGTGAAGTGTTAGATTTGATACAGgtaactgatt--tttttcccatgtcctgtcttttgat--atgcatttaaaaaactatg-agaagcttat-accattttcatgcttgtgcag
||| |||||  ||||||||||   ||||||||| || | |||||| || | |||||| ||||| ||| | || ||||||||||||||||| |||||||||||  ||  ||  ||  |       | |||  | || |  ||| |||| |||||| | | |||  ||||| |  |||| |||  || |||||
AGAGGCTGTCCGGGATGATTTCACTTTCTCAGTAGACGGTAAAGAGGTCAAAGAGGTGGATTCAGTACTGACAACTGGTGAAGTGTTAGACTTGATACAGgttgctacttggttcgttttcctgcttgtactatggttgatgtatttgaaaaacaaggcagacacttattatgatttgcatatttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29667390|gb|CB663665.1|CB663665
EST:     CAGAGGTAGATTCCGTATTAACCACTGGTGAAGTGTTAGATTTGATACAG                         TCCAGATCTGTTGATTTCAAGACCCTAGAGGAGTCTCCCATGGACAGATT
genomic: CAGAGGTAGATTCCGTATTAACCACTGGTGAAGTGTTAGATTTGATACAGgtaactgatt ... gcttgtgcagTCCAGATCTGTTGATTTCAAGACCCTAGAGGAGTCTCCCATGGACAGATT
EST: gi|218489808|gb|FG954312.1|FG954312
EST:     CAGAGGTAGATTCCGTATTAACCACTGGTGAAGTGTTAGATTTGATACAG                         TCCAGATCTGTTGATTTCAAGACCCTAGAGGAGTCTCCCATGGACAGATT
genomic: CAGAGGTAGATTCCGTATTAACCACTGGTGAAGTGTTAGATTTGATACAGgtaactgatt ... gcttgtgcagTCCAGATCTGTTGATTTCAAGACCCTAGAGGAGTCTCCCATGGACAGATT