1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCACCTTGGGACATATCCACCCAATGTTTGTGTTGGTACACCATGCTGGATGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGgtatgcttttattccacagttctgtcttgttgctatcaatgctagtttaattgttctgcattctggctgaggaaaccaaatgctgcaccattgttattat...
species | Oryza sativa |
transcript | LOC_Os03g53250.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTG GAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTTEST: gi|58678356|gb|CK067043.1|CK067043
genomic: TGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGgtatgctttt ... tatattgcagGAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTT
EST: TGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTG GAAGTTGATATCTGGTCATTTGGCEST: gi|218481402|gb|FG945358.1|FG945358
genomic: TGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGgtatgctttt ... tatattgcagGAAGTTGATATCTGGTCATTTGGC
EST: TGGCTCCAGAGGTTCTTCGTGNCATGCGAGACAAAAACCAATATGGACTG GAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTTEST: gi|55827804|gb|AU055962.2|AU055962
genomic: TGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGgtatgctttt ... tatattgcagGAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTT
EST: TGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTG GAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTTEST: gi|58658688|gb|CK047368.1|CK047368
genomic: TGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGgtatgctttt ... tatattgcagGAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTT
EST: TGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTG GAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTT
genomic: TGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGgtatgctttt ... tatattgcagGAAGTTGATATCTGGTCATTTGGCTGTTTTTTATTGGAGATGCTTACACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACCTTGGGACATATCCACCCAATGTTTGTGTTGGTACACCATGCTGGATGGCTCCAGAGGTTCTTCGTGCCATGCGAGACAAAAACCAATATGGACTGgtatgcttttattccacagttctgtcttgttgctatcaatgctagtttaattgttctgcattctggctgaggaaaccaaatgctgcaccattgttattat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctgagg