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ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca...
species | Oryza sativa |
transcript | LOC_Os03g52840.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|38472219|gb|CF956350.1|CF956350
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|58691585|gb|CK080272.1|CK080272
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|29672938|gb|CB669213.1|CB669213
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|25798315|gb|CA754276.1|CA754276
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|38472528|gb|CF956660.1|CF956660
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGC-TTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|58661735|gb|CK050415.1|CK050415
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|84117692|gb|CD285458.1|CD285458
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|38471655|gb|CF955786.1|CF955786
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: CTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|33800499|gb|CF326119.1|CF326119
genomic: CTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|29681405|gb|CB677680.1|CB677680
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|29681406|gb|CB677681.1|CB677681
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|58689542|gb|CK078229.1|CK078229
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|14571290|gb|BI118658.1|BI118658
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|58692794|gb|CK081481.1|CK081481
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|58609394|gb|CK037427.1|CK037427
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCEST: gi|29674038|gb|CB670313.1|CB670313
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA