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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca...

Basic information

species Oryza sativa
transcript LOC_Os03g52840.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G135283_T01 (Zea mays), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcata-atgcttccttccttgttgtctttctttgtcctca
 || |||||||||||||| |||||||| || ||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||      | |||||  |||| |  |  ||| |    |||  |||||||  ||| |||||||  ||||| ||||||||    || 
GCCCGCCAACTTCCATGTATACACTGCACTCTTGAAGCCACATGAAAGGATCATGGCTTTGGATCTTCCTCACGGTGGACATCTTTCTCATGGTTACCAGgtacatgggtctggagtttccttgtacctcca-actatttttattttgatgctgcacacaagcatggatgtttccttctctgttgcctttctttcctttct

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtaca--tgggtctggacttcttcattgcctccttactactagttgtttc-agttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca
 ||| | |||||||| |||||||||||  |||||||||| ||||||||||| |||||  | |||||||| |||||||| ||||| || || || || |||||  |  |  |  |    || |  ||||    | |  |||  | ||   | |||||  |  ||     | |      |      |  |   |   ||||    
CCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTATCGCATGGTTATCAGgttaagttctgcttctgattatcaattgtggtcattttacctgctgccacgagttgataatcatattaagtctgcaataagacatgatggatgaatgtcg---

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtaca--tgggtctggacttcttcattgcctccttactactagttgtt-tcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca
 ||| | |||||||| |||||||||||  |||||||||| ||||||||||| |||||  | |||||||| |||||||| ||||| || || || || |||||  |  |  |  |    || |   |||    | |  |||  | ||   | |||||  |  ||  |  | |      |      |  |   |   ||||    
CCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTGTCGCATGGTTATCAGgttaagttctgcttatgattatcagttgtggtcattttacctgctgccatgagttgataatcatactaagtctgcaataagacatgatgaatgaatgtcg---

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgg--gtctggacttct-tcattgcctccttactactagttgtttcagttggca-tgcaagcataatgcttccttccttgttgtctttctttgtcctca
 ||||| || ||||| |||||||||||  |  | ||||| ||||| |||||||||||  | ||||||||||||||||| |||||||||||||| || ||||||| | |  || || |||||  |||||   | | |  ||  |     |  | |  | | ||     ||     ||   |  || |||||||| | | |     
TCCTGCAAATTTCCACGTTTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCACGGATATCAGgtactttgaagtttgaacttccatcattcatttcatcttataatgaaatgaaatctgtagtgtgtatatggctatttaataattattgtctttttatttt----

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA18G27710.1 (Glycine max), 5'ss of exon 7
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacat---gggtctggacttcttcattgcctccttactactagttgtttc---agttggcatgcaagcat--aatgcttcct-tccttgttgtctttctttgtcctca-----------------------------------------------------------------------
 ||||| || |||||||| ||||||||  |  | ||||| ||||| |||||||||||  | ||||||||||||||||| ||||||||||| || || ||||||| |     || || |||||  |  | | |     ||  || |    ||   |||  | ||      ||  |||  ||  | || || || | ||  | | |  |||                                                                       
TCCTGCAAATTTCCATGTCTACACTGCATTGCTTAAACCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGGTGGCCATCTTTCTCATGGATATCAGgtacttttgaagtttgaacttccaccattcatttcatcttataatcaaatctatagtgtgtatatggctatttaataattattgtcttttttattttgatatcttttcaaagattgagtagaccttggggtcattaatgaaaaattatactcgtttaatattgctgctataactacgcag

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: AT4G37930.1 (Arabidopsis thaliana), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca
 ||||||||||||||||| ||||||||  | || || || ||||| |||||||||||  | ||||||||||||||||| ||||||||||| || || ||||| | |     |  ||||  |   || |   |    |||   ||  || | ||          ||||   || ||| ||| || | | || |        
TCCTGCCAACTTCCATGTGTACACTGCATTGTTAAAGCCTCATGAAAGAATCATGGCACTTGATCTTCCTCATGGTGGTCATCTTTCTCATGGTTATCAGgtgccttcaagttaactttgt--atgtcatttcggaactctctgactctgatga---------ataacagtttctttcttcttatttctcatcag-----

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttca--ttgcctccttactactag------ttgtttcagttggc-atgcaagc-ataatgcttcctt-ccttgttgtctttctttgtcctca-----
||| || || ||||| |||||||||||  | ||||| || ||||| |||||||||||  | ||| | ||||||||||||||||||||||| || || ||||||| |||||       |||  |  |||     | | || | |      || | |||  |     || ||   ||| ||  || || |||  ||   ||| ||||  ||       
ACCAGCTAATTTCCAAGTTTACACTGCATTGTTGAAGCCTCATGAAAGAATCATGGCACTTGATTTACCTCATGGTGGACATCTTTCTCATGGTTATCAGgtacttgggttctagtctctctagcttggtcagtcagtatttgactttcttttctcatctctttgtggaattgatattgtatcttttcctcatttcttttatttgctcttgtgcag

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca---------
 ||||| || || || ||||||||||| ||||| ||| | ||||| ||||| |||||  | ||||||||||||||||||||||||||||| ||||| ||||| | |  | ||       |||||       |  || |||| | |  ||||  || | | | | |     |  ||  ||  ||    || || | | |           
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatgact-------ttcatctagagttccctgctagatataccagt--gctttccatcttctcagtggctgtctattttgacttattagccatgggaaaaaaat

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca---------
 ||||| || || || ||||||||||| ||||| ||||| ||||| ||||| |||||  | ||||||||||||||||||||||||||||| ||||| ||||| | |  | ||       |||||       |  || |||| | | || ||  || | | | | |     |  ||  ||  ||    || || | | |           
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAACCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatgact-------ttcatctagagttccctgctagatatatcggt--gctttccatcttctcagtggctgtctattttgacttattagccatgggaaaaaaat

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv00s0211g00160.t01 (Vitis vinifera), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca---------
 ||||| || || || ||||||||||| ||||| ||| | ||||| ||||| |||||  | ||||||||||||||||||||||||||||| ||||| ||||| | |  | ||       |||||       |  || |||| | |  ||||  || | | | | |     |  ||  ||  ||    || || | | |           
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAAGCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatgact-------ttcatctagagttccctgctagatataccagt--gctttccatcttctcagtggctgtctattttgactttttagccatgggaaaaaaat

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv00s0211g00100.t01 (Vitis vinifera), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca---------
 ||||| || || || ||||||||||| ||||| ||||| ||||| ||||| |||||  | ||||||||||||||||||||||||||||| ||||| ||||| | |  | ||       |||||       |  || |||| | | || ||  || | | | | |     |  ||  ||  ||    ||||| | | |           
GCCTGCAAATTTTCAAGTTTACACTGCACTATTAAAACCTCATGAAAGAATTATGGCACTTGATCTTCCTCATGGTGGACATCTTTCTCATGGCTATCAGgtgcttatgact-------ttcatctagagttccctgctagatatatcggt--gctttccatcttctcagtggctgtctattttgacttcttagccatgggaaaaaaat

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcatt---gcctccttactactagttgtttcagttggcatgcaag-cataatgcttccttccttgttgtctttctttgtcctca---
 ||||||||||| || | |||||| ||  |||| ||||| |||||||||||||||||  | ||||||||||||||||| |||||||| || || || ||||| | |     ||   | ||||| |   | ||  |  || | |    ||  |  |||  | |    | |  || ||    ||  |     |||  |||   |||   
CCCTGCCAACTTTCAAGCTTACACGGCATTATTAAAACCTCATGAGAGAATCATGGCACTTGATCTTCCTCATGGTGGGCATCTTTCACATGGTTATCAGgtgctta----tgagttccttcaattaagacttttgcctgccaaac-ttgaacatggtgtcctgctcttggtgatta--accaagacaaattttattggattcaatt

upper sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 6
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 5'ss of exon 6
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgttt-cagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca------------------------------------------------------------
 || || ||||| || || ||||| || ||  |||| ||||||||| | |||||||| |||||||||||||||||||| ||  | ||||| || || ||||||| |   |||||  || |  |||    ||  | |  || ||| ||   ||       ||| |  |||  | |     | |||| | |||||  | |  |                                                            
GCCAGCAAACTTTCAGGTGTACACAGCTCTCCTGAAGCCACATGAGCGGATCATGGCGTTGGATCTTCCTCATGGTGGCCACTTGTCTCATGGATATCAGgtacgtct-tctgg--ttttctattcatgcccaatttatacttgcttgtggtatttgctcaaactgaata-tcctaagatggttgccattcttactacgtatctgcacgtttctccacaatcatgaatttattcacacttcatgcttttcatggcaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675547|gb|CB671822.1|CB671822
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|25798315|gb|CA754276.1|CA754276
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29615988|gb|CB621000.1|CB621000
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29624282|gb|CB629293.1|CB629293
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29614138|gb|CB619151.1|CB619151
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGACACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29636379|gb|CB641388.1|CB641388
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATNTCAGCAGTTTCGAT
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGAT
EST: gi|29619822|gb|CB624834.1|CB624834
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|33381238|gb|CF196581.1|CF196581
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29638078|gb|CB643087.1|CB643087
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29624606|gb|CB629617.1|CB629617
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|4714813|gb|AU055930.1|AU055930
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|58689542|gb|CK078229.1|CK078229
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29621132|gb|CB626143.1|CB626143
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|38472528|gb|CF956660.1|CF956660
EST:     TCATGGC-TTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29641599|gb|CB646606.1|CB646606
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|58661735|gb|CK050415.1|CK050415
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|117244508|gb|CT848411.1|CT848411
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29614628|gb|CB619641.1|CB619641
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29670801|gb|CB667076.1|CB667076
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|58691585|gb|CK080272.1|CK080272
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29646105|gb|CB651112.1|CB651112
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|58657072|gb|CK045752.1|CK045752
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATCTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29618931|gb|CB623943.1|CB623943
EST:     TCATGGCTTGGGATCTTCCTCATGGCGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29618036|gb|CB623048.1|CB623048
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29667991|gb|CB664266.1|CB664266
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29633899|gb|CB638908.1|CB638908
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29681406|gb|CB677681.1|CB677681
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29615274|gb|CB620286.1|CB620286
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|14571290|gb|BI118658.1|BI118658
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29646445|gb|CB651452.1|CB651452
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|38472219|gb|CF956350.1|CF956350
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29621678|gb|CB626689.1|CB626689
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29674038|gb|CB670313.1|CB670313
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|33800499|gb|CF326119.1|CF326119
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29634602|gb|CB639611.1|CB639611
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCG
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCG
EST: gi|29678030|gb|CB674305.1|CB674305
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29681405|gb|CB677680.1|CB677680
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|38471655|gb|CF955786.1|CF955786
EST:     CTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: CTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|58695121|gb|CK083808.1|CK083808
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29672938|gb|CB669213.1|CB669213
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|33674867|gb|CF303106.1|CF303106
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29622694|gb|CB627705.1|CB627705
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|84117692|gb|CD285458.1|CD285458
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29665918|gb|CB662193.1|CB662193
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|33381615|gb|CF196958.1|CF196958
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|38471328|gb|CF955459.1|CF955459
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29630142|gb|CB635151.1|CB635151
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29613481|gb|CB618494.1|CB618494
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29674139|gb|CB670414.1|CB670414
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|88413328|gb|CI581343.1|CI581343
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|58673445|gb|CK062131.1|CK062131
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|58692794|gb|CK081481.1|CK081481
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|58609394|gb|CK037427.1|CK037427
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|4714773|gb|AU055890.1|AU055890
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|11442623|gb|BF430526.1|BF430526
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
EST: gi|29634567|gb|CB639576.1|CB639576
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGA
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGA
EST: gi|29687893|gb|CB684168.1|CB684168
EST:     TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAG                         ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC
genomic: TCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggt ... atggttgcagACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCTGCCAACTTCCATGTTTACACTGCCCTATTGAAACCACATGAGAGAATCATGGCTTTGGATCTTCCTCATGGTGGACATCTTTCTCACGGCTACCAGgtacatgggtctggacttcttcattgcctccttactactagttgtttcagttggcatgcaagcataatgcttccttccttgttgtctttctttgtcctca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA