1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTCCAGCCAGGTCATTGCACAGTATTACCAACTAATCCGCCTAGGCTTTGAGgtgagaaaaatgctatttcttagtactctctctccgtttcaggttataagacgttttgcttttggtcaaagtcaaactactttaaatttaactaagttta...
species | Oryza sativa |
transcript | LOC_Os03g51080.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCACAGTATTACCAACTAATCCGCCTAGGCTTTNAG GGGTACAAGAACATCATGGAGAACTGCCAGGAGAACGCNATGGTGCTGAAGEST: gi|58586211|gb|CF984519.1|CF984519
genomic: GCACAGTATTACCAACTAATCCGCCTAGGCTTTGAGgtgagaaaaa ... atatttgcagGGGTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGATGGTGCTGAAG
EST: AACTAATCCGCCTAGGCTTTGAG GGGTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGATGGTGCTGAAGEST: gi|29659447|gb|CB655722.1|CB655722
genomic: AACTAATCCGCCTAGGCTTTGAGgtgagaaaaa ... atatttgcagGGGTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGATGGTGCTGAAG
EST: GCCAGGTCATTGCACAGTATTACCAACTAATCCGCCTAGGCTTTGAG GGGTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGATGGTGCTGAAGEST: gi|29659020|gb|CB655295.1|CB655295
genomic: GCCAGGTCATTGCACAGTATTACCAACTAATCCGCCTAGGCTTTGAGgtgagaaaaa ... atatttgcagGGGTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGATGGTGCTGAAG
EST: CCAGCCAGGTCATTGCACAGTATTACCAACTAATCCGCCTAGGCTTTGAG GGGTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGATGGTGCTGAAGEST: gi|29665296|gb|CB661571.1|CB661571
genomic: CCAGCCAGGTCATTGCACAGTATTACCAACTAATCCGCCTAGGCTTTGAGgtgagaaaaa ... atatttgcagGGGTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGATGGTGCTGAAG
EST: AGGTCATTGCACAGTATTACCAACTAATCCGCCTAGGCTTTGAG GGGTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGATGGTGCTGAAGEST: gi|58696140|gb|CK084827.1|CK084827
genomic: AGGTCATTGCACAGTATTACCAACTAATCCGCCTAGGCTTTGAGgtgagaaaaa ... atatttgcagGGGTACAAGAACATCATGGAGAACTGCCAGGAGAACGCGATGGTGCTGAAG
EST: CCAGCCAGGTCATTGCACAGTATTACCAACTAATCCGCCTAGGCTTTGAG GGGTACAAGAACATCATGGAGAACTG
genomic: CCAGCCAGGTCATTGCACAGTATTACCAACTAATCCGCCTAGGCTTTGAGgtgagaaaaa ... atatttgcagGGGTACAAGAACATCATGGAGAACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCAGCCAGGTCATTGCACAGTATTACCAACTAATCCGCCTAGGCTTTGAGgtgagaaaaatgctatttcttagtactctctctccgtttcaggttataagacgttttgcttttggtcaaagtcaaactactttaaatttaactaagttta
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