1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CATGGAAAATGGTGGACCTGCCCCTGAATCGGTTACTGATAAGATCTTCTCTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttgacgctgacttgttagtttttgttgtttgttttgctcccagggtattgaaatatatgtttcactcctttattcttgcccacatcgcag
species | Oryza sativa |
transcript | LOC_Os03g50480.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|58693865|gb|CK082552.1|CK082552
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|58675297|gb|CK063984.1|CK063984
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|29612833|gb|CB617846.1|CB617846
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|29689598|gb|CB685873.1|CB685873
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|29671540|gb|CB667815.1|CB667815
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|29664693|gb|CB660968.1|CB660968
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|58654844|gb|CK043524.1|CK043524
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|58682481|gb|CK071168.1|CK071168
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|58670502|gb|CK059188.1|CK059188
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTEST: gi|15008682|gb|AU223070.1|AU223070
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTT
EST: TCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|58666397|gb|CK055083.1|CK055083
genomic: TCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: TAATACAACGACAATTACTGAATATCTCATCGGCGGAAGACCTTCCAGAT GTCGATATTTCEST: gi|29682384|gb|CB678659.1|CB678659
genomic: TAATACAACGACAATTACTGAATATCTCATCG-CGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTC
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|58602722|gb|CK013250.1|CK013250
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|58667790|gb|CK056476.1|CK056476
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|29614791|gb|CB619804.1|CB619804
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|29671584|gb|CB667859.1|CB667859
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTEST: gi|33675599|gb|CF303838.1|CF303838
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCT
EST: CTA-TACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGAT GTCGATATTTCT
genomic: CTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttg ... cacatcgcagGTCGATATTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGAAAATGGTGGACCTGCCCCTGAATCGGTTACTGATAAGATCTTCTCTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttgacgctgacttgttagtttttgttgtttgttttgctcccagggtattgaaatatatgtttcactcctttattcttgcccacatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA