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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCCTGCAACGCTCATACCATATGTGATCCTGAACTGAGGCCCCTTGGGACTGGACTATACCCTGTTTTATCTATTATTAACCACAGgtgatatactattcctttattcatcgtttagcatcttcctccgattttatcatttaataaataattattattgcatctaccctttcctggtatacttag

Basic information

species Oryza sativa
transcript LOC_Os03g49730.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49730.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G457881_T03 (Zea mays), 5'ss of exon 6
TTTGCCTGCAACGCTCATACCATATGTGATCCTGAACTGAGGCCCCTTGGGACTGGACTATACCCTGTTTTATCTATTATTAACCACAGgtgatatactattccttta--------ttcatc-gtttagcatcttcctccgattttatcatttaataaataattattat-----tgcatctaccctttcctggtatacttag
||||||||||| || |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||  |||| ||||||||||||||||  ||| |||  |  |||        |||||   | ||  |||||   | ||||  | || |||||| || |  |   |     | |||| |   |||   |||||| | ||
TTTGCCTGCAATGCGCATACCATATGTGACCCTGAACTTAGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAGgtcgtatgctaaactattagctatatattcatttatctattatctttaccagattagagcaattaatatatcaccaccttctctattcatccattttttttgggtatattcag

upper sequence: LOC_Os03g49730.3 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv18s0001g03730.t01 (Vitis vinifera), 5'ss of exon 6
TTTGCCTGCAACGCTCATACCATATGTGATCCTGAACTGAGGCCCCTTGGGACTGGACTATACCCTGTTTTATCTATTATTAACCACAGgtga-tatactattcctttattcatcgtttagcatct-tcctccgattttatcatttaataaataattattattgcatctaccctttcctggtatacttag
 |||| ||||| ||||||||||| ||||||  |||||| || || ||||| ||||||||||| |||||  | || |||||||||||||||| | |    || |   |||      ||  |   |   |||| |   | |    | |  ||||| |||    |  |||                       
CTTGCATGCAATGCTCATACCATTTGTGATGGTGAACTAAGACCGCTTGGTACTGGACTATATCCTGTCATTTCAATTATTAACCACAGgtaagtgctttagtggattaacttgtgtcaatttttcatccttctgctgttggctctgctaaatgattccagtgtcatag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58597495|gb|CK008023.1|CK008023
EST:     CTTGGAACTGGACTATACCCTGTTTTATCTATTATTAACCACAG                         TTGTGTACCGAATGCAGTTTTGATATTTGAAGGTCGGACAGCATATGTTCG
genomic: CTTGGGACTGGACTATACCCTGTTTTATCTATTATTAACCACAGgtgatatact ... gtatacttagTTGTGTACCAAATGCAGTTTTGATATTTGAAGGTCGGACAGCATATGTTCG