1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCTGCCGGTGGGAACTCAGCAACAGAGCCATATATTGTTGCTCATAATATCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAGgtattttctttctactaaagaataaagaaacagaaacagttagattgactctttcgttgttagtaacatggcaatttatatctcttcaacagttaaacca...
species | Oryza sativa |
transcript | LOC_Os03g49610.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAG GCAAGTCAGAAAGGCGAGATCGGAATAGTTCTCGATTTTAATTGGTATGAAEST: gi|58658600|gb|CK047280.1|CK047280
genomic: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAGgtattttctt ... aaacatttagGCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAA
EST: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAG GCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAAEST: gi|58596985|gb|CK007513.1|CK007513
genomic: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAGgtattttctt ... aaacatttagGCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAA
EST: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAG GCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAAEST: gi|58672509|gb|CK061195.1|CK061195
genomic: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAGgtattttctt ... aaacatttagGCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAA
EST: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAG GCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAAEST: gi|58653737|gb|CK042417.1|CK042417
genomic: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAGgtattttctt ... aaacatttagGCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAA
EST: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAG GCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAAEST: gi|58668081|gb|CK056767.1|CK056767
genomic: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAGgtattttctt ... aaacatttagGCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAA
EST: AACAAG-TCCAG GCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAAEST: gi|58671028|gb|CK059714.1|CK059714
genomic: AACAAGTTCCAGgtattttctt ... aaacatttagGCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAA
EST: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAG GCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAAEST: gi|58664913|gb|CK053599.1|CK053599
genomic: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAGgtattttctt ... aaacatttagGCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAA
EST: CATCTTATCTCATGCTACTGCAGTTGATAGATCACCGTAACAAGTTCCAG GCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAAEST: gi|58612072|gb|CK039784.1|CK039784
genomic: CATCTTATCTCATGCTACTGCAGTTGATAGAT-ACCGTAACAAGTTCCAGgtattttctt ... aaacatttagGCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAA
EST: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAG GCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAA
genomic: TCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAGgtattttctt ... aaacatttagGCAAGTCAGAAAGGCAAGATCGGAATAGTTCTCGATTTTAATTGGTATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCCGGTGGGAACTCAGCAACAGAGCCATATATTGTTGCTCATAATATCATCTTATCTCATGCTACTGCAGTTGATAGATACCGTAACAAGTTCCAGgtattttctttctactaaagaataaagaaacagaaacagttagattgactctttcgttgttagtaacatggcaatttatatctcttcaacagttaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa