Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTGCTGGTGGGAACTCAGCAACAGAACCATACATTGTTGCTCATAATTTTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttctcgacttgttttttagataatttaagctttattgaactcagtcaattacatcaaagtgatacaatcatactaagaacacttctgacctct...

Basic information

species Oryza sativa
transcript LOC_Os03g49600.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49600.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AC217401.3_FGT001 (Zea mays), 5'ss of exon 6
CGCTGCTGGTGGGAACTCAGCAACAGAACCATACATTGTTGCTCATAATTTTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttctcgacttgttttttagataatttaagctttattgaactcagtcaattacatcaaagtgatacaatcatactaagaacacttctgacctct-----
| ||||||||||||| |||||||| ||||| || || |||||||||||||||||||| ||||||||||| |||||  |||||||||| |  ||||||||||||| || |      |  | | | | ||||||    ||  |   || |     | |   ||  |||||  | |    ||  |  ||  ||      |  |     
CTCTGCTGGTGGGAATTCAGCAACGGAACCTTATATCGTTGCTCATAATTTTCTCTTGTCACATGCTGCTGCTGTGTCAAGATACCGTAACAAGTATCAGgtatgttctact---taatatctcatataattccc-ctggacaaaaatatcatagtattattgaagtgcaatatcggtatcagtaat-ctggaatgcagtacaaa

upper sequence: LOC_Os03g49600.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G118003_T01 (Zea mays), 5'ss of exon 6
CGCTGCTGGTGGGAACTCAGCAACAGAACCATACATTGTTGCTCATAATTTTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttt-tctcgacttgttttttagataatttaagctttattgaactcagtcaattacatcaa--agtgatacaatcatactaagaacacttctgacctct
||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||  |||||||| | || |||||||||||||| || || ||||||||||||   ||| ||     |    || |  | | |     | | |  ||| || |  ||  | |  |||| || | | ||  ||          |||  | |
CGCTGCTGGTGGGAATTCAGCAACCGAACCTTACATAGTTGCTCATAATTTTCTCTTGGCACATGCTACTGCAGTTGCAAGATACCGTACGAAATATCAGgtatttccatcttgagaacctcagaagttcctctgaaa---aataacatcactctagcactcctaggagtggtaaactgatgttattttattcaatgaagtgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58679048|gb|CK067735.1|CK067735
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|2311685|gb|C27840.1|C27840
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|58676021|gb|CK064708.1|CK064708
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|32948487|gb|BP185059.1|BP185059
EST:     TTCTCTTATCACATGCTGCAACTGTTGCAAGAT-CCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAA-GTTGGAATAGTTCTGGACTTCAATTGGTATGA
EST: gi|218501129|gb|FG969556.1|FG969556
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|33794165|gb|CF322973.1|CF322973
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|58662457|gb|CK051143.1|CK051143
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|163928475|gb|EG711363.1|EG711363
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|27576307|gb|CA999001.1|CA999001
EST:     TGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|27577942|gb|CB000637.1|CB000637
EST:     TGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|33381892|gb|CF197235.1|CF197235
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGNTACCGGACTAAGTATCNN                         NCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|88212028|gb|CI211668.1|CI211668
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|40490189|gb|BX899802.1|BX899802
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|58678675|gb|CK067362.1|CK067362
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|33674893|gb|CF303132.1|CF303132
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|29659818|gb|CB656093.1|CB656093
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|218498123|gb|FG968220.1|FG968220
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|218482013|gb|FG963445.1|FG963445
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|428803|gb|D24959.1|D24959
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCA-GGCAAAGTTGGA-TAGTTCTGGACTTCAATTGG-ATGAG
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|163928720|gb|EG711233.1|EG711233
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|58664218|gb|CK052904.1|CK052904
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|58680012|gb|CK068699.1|CK068699
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|58668191|gb|CK056877.1|CK056877
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|58679549|gb|CK068236.1|CK068236
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|33684672|gb|CF312911.1|CF312911
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|163919917|gb|EG714919.1|EG714919
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAGGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|3106636|gb|D42356.1|D42356
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|163923452|gb|EG709393.1|EG709393
EST:     ATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: ATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|58682166|gb|CK070853.1|CK070853
EST:     TCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCGAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGA
genomic: TCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATC-AGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGA
EST: gi|218483773|gb|FG955251.1|FG955251
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|33795224|gb|CF323484.1|CF323484
EST:     TCTCTTATCACATGCCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCA-GGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TCTCTTATCACATGC-TGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|58681508|gb|CK070195.1|CK070195
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|58677218|gb|CK065905.1|CK065905
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTT
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTT
EST: gi|55827472|gb|AU032064.2|AU032064
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|33676122|gb|CF304361.1|CF304361
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|86910403|gb|CI293058.1|CI293058
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|27577236|gb|CA999930.1|CA999930
EST:     TGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCCCCTTGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
EST: gi|33675008|gb|CF303247.1|CF303247
EST:     TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAG                         GCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA
genomic: TTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttc ... aaaaatgtagGCAGCTCAGCAAGGCAAAGTTGGAATAGTTCTGGACTTCAATTGGTATGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTGCTGGTGGGAACTCAGCAACAGAACCATACATTGTTGCTCATAATTTTCTCTTATCACATGCTGCAGCTGTTGCAAGATACCGGACTAAGTATCAGgtattttttctcgacttgttttttagataatttaagctttattgaactcagtcaattacatcaaagtgatacaatcatactaagaacacttctgacctct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA