1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTGGTAAAACTCGTCTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttcttccaggtctctttatcccagtgtgcattcgaattggatttgtacaacagttttccagctgaacaagctatatatcttatgtctatgttgtag
species | Oryza sativa |
transcript | LOC_Os03g43900.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAG AGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGGEST: gi|88283343|gb|CI404789.1|CI404789
genomic: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttct ... tatgttgtagAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGG
EST: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAG AGGCATGAAATCGAGGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGEST: gi|88486588|gb|CI423859.1|CI423859
genomic: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttct ... tatgttgtagAGGCATGAAATCGA-GGTTAGCGGCAACATATCCAGATGCTTTTCCTACTG
EST: CTTCTCAAGTCCATGAGGGCTGATCTTNACCATATTTTCCTGAAGTTGAG AGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCGTACTGGEST: gi|88513213|gb|CI440719.1|CI440719
genomic: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttct ... tatgttgtagAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGG
EST: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAG AGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGGEST: gi|89189578|gb|CI049117.1|CI049117
genomic: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttct ... tatgttgtagAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGG
EST: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAG AGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGGEST: gi|88505132|gb|CI432638.1|CI432638
genomic: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttct ... tatgttgtagAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGG
EST: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAG AGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGGEST: gi|86505882|gb|CI148515.1|CI148515
genomic: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttct ... tatgttgtagAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGG
EST: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAG AGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGGEST: gi|88491988|gb|CI429260.1|CI429260
genomic: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttct ... tatgttgtagAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGG
EST: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAG AGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGGEST: gi|88515099|gb|CI442753.1|CI442753
genomic: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttct ... tatgttgtagAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGG
EST: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAG AGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGG
genomic: CTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttct ... tatgttgtagAGGCATGAAATCGAGGTTAGCGGCAACATATCCAGATGCTTTTCCTACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAACAATGCTTTGCGGAGGTGTCTAATGACTTTGCTGGTAAAACTCGTCTTCTCAAGTCCATGAAGGCTGATCTTGACCATATTTTCCTGAAGTTGAGgtacatttcttccaggtctctttatcccagtgtgcattcgaattggatttgtacaacagttttccagctgaacaagctatatatcttatgtctatgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG