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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAACCTCCTCGTCAGAATGTTCCAGTAAAAGATGTTCACTCAGAGAGTACTCCAGCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGATTAAGgtatttgttataatagcacattatcatgctggcctctccttccaatttaataaacctttatatgccaattcagaagaaggcctctttttttttttttttt...

Basic information

species Oryza sativa
transcript LOC_Os03g42820.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g42820.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G342105_T02 (Zea mays), 5'ss of exon 1
ATGAACCTCCTCGTCAGAATGTTCCAGTAAAAGATGTTCACTCAGAGAGTACTCCAGCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGATTAAGgtatttgttataatagcacattatcatgctggcct-----ctccttccaatttaataaacctttatatgccaattcagaagaaggcctctttttttttttttttt
||| ||||||||||||| |  |||||||  |||||||| ||||||| |||||||||||||   || ||||| || |||| ||||   ||| ||| || |||||||| |  ||||    ||||||  ||||   ||     || || |||  ||   ||  ||  |     | | | |  | ||    | || || | |   ||  
ATGGACCTCCTCGTCAGCACATTCCAGTTGAAGATGTTAACTCAGAAAGTACTCCAGCAAGCATCTTGCCCTCAAATATTTTCCGCACAAGTGGCTTGAGgtatttctcgtaatgatgcattatgttgcttcactaattgcttctgccaccttgcaaatactaca---atcgaattattacaaatttttttgttatctacctt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33808071|gb|CF329925.1|CF329925
EST:     ACTCCAGCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGATTAAG                         GGTTTGTGCTGGATGTAAAACTCCAATCGGTCAAGGACGGTTTCTTAGTTG
genomic: ACTCCAGCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGATTAAGgtatttgtta ... gacggtgtagGGTTTGTGCTGGATGTAAAACTCCAATCGGTCAAGGACGGTTTCTTAGTTG
EST: gi|33804763|gb|CF328259.1|CF328259
EST:     ACTCCAGCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGATTAAG                         GGTTTGTGCTGGATGTAAAACTCCAATCGGTCAAGGACGGTTTCTTAGTTG
genomic: ACTCCAGCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGATTAAGgtatttgtta ... gacggtgtagGGTTTGTGCTGGATGTAAAACTCCAATCGGTCAAGGACGGTTTCTTAGTTG