Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACCATATGTTACTGAGGATGAACTGAAATTAATGTTACGAGGTGCAGAGTTGAGTGGCGCTATTGCAGAAGACGAACAGgttagataatatcacaataatttcatgtatatattttgcttacctatgttgttgtttattgccttgattattattaattttgtgaatttgacttattttt...

Basic information

species Oryza sativa
transcript LOC_Os03g39640.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g39640.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT1G55930.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAACCATATGTTACTGAGGATGAACTGAAATTAATGTTACGAGGTGCAGAGTTGAGTGGCGCTATTGCAGAAGACGAACAGgttagataatatcaca-ataatttc---atgtatatattttgcttacctatgttgttgtttattgccttgattattattaattttgtgaatttgacttattttt
|||||||||||||||||| |||||| ||||| ||||| |||| |||||||| || ||||| ||||| | ||| || || |||||  ||   | | | | ||   ||    |||  | |||       || | || |  |    ||       |||                               
TGAACCATATGTTACTGAAGATGAATTGAAACTAATGCTACGTGGTGCAGAATTAAGTGGGGCTATAGAAGAGGAAGAGCAGgtatgagtttgttatatatggattttcgatgagtctataccatagacttgtgatagttcacatgatacatattgcag---------------------------

upper sequence: LOC_Os03g39640.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT3G13070.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAACCATATGTTACTGAGGATGAACTGAAATTAATGTTACGAGGTGCAGAGTTGAGTGGCGCTATTGCAGAAGACGAACAGgttagataatatcacaataatttcatgtatatattttgcttacctatgttgttgtttattgccttgattattattaattttgtgaatttgacttattttt
|||||||||||||||||| |||||  ||||| | ||| || |||||||||| |||||||| || |||| |||||| || |||||  ||   | |   ||||| ||  | | || |  |  ||   | |      |||||||      ||||    |  |                       
TGAACCATATGTTACTGAAGATGAGTTGAAACTGATGCTAAGAGGTGCAGAATTGAGTGGTGCCATTGAAGAAGAGGAGCAGgtatga--gttttgtaataaatttgtttctaaaaat--ctataccagacctatgtttatgctaccgattgccctgcag----------------------