1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTACAGACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAGgtacccccatccctctctcttccctctgcgtgcgcttgtgcttttgcatgtccagcagtacctgaaatttgaaatccttgcag
species | Oryza sativa |
transcript | LOC_Os03g25390.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGGGCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|27921131|gb|CB096939.1|CB096939
genomic: TTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: ACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|30228758|gb|CB966648.1|CB966648
genomic: ACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: TTGGGCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|88509241|gb|CI436747.1|CI436747
genomic: TTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: AGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|30228750|gb|CB966640.1|CB966640
genomic: AGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: TTGGGCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|66918985|gb|CX105833.1|CX105833
genomic: TTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: ACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|15855989|gb|BI808801.1|BI808801
genomic: ACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: ACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTTGCC-TCAG GTTGCAACTGAC-AATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|88969544|gb|CI383054.1|CI383054
genomic: ACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: CTGGTGAAAGAGATTGGCCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|89186178|gb|CI048047.1|CI048047
genomic: CTGGTGAAAGAGATTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: ACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|88262856|gb|CI364434.1|CI364434
genomic: ACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: AGCCAGCTGGTGAAAGAGATTGGCCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|86864804|gb|CI344294.1|CI344294
genomic: AGCCAGCTGGTGAAAGAGATTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: AGATTGGCCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|88275141|gb|CI395745.1|CI395745
genomic: AGATTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: GATTGGCCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTEST: gi|14980927|gb|BI305605.1|BI305605
genomic: GATTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
EST: TTGGGCGTCAG GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
genomic: TTGGCCGTCAGgtacccccat ... atccttgcagGTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTACAGACAGAACAAATGAAGAGAATTGGCAATGAGCTGGATACTGTTCACTTTTCGTTAAAGAAGGCTAGCCAGCTGGTGAAAGAGATTGGCCGTCAGgtacccccatccctctctcttccctctgcgtgcgcttgtgcttttgcatgtccagcagtacctgaaatttgaaatccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA