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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGTGTTAGAGCATTAATGTACTTCAATCATAGTGGCTACAAACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggacaccacccttcgacatatatttttactgcagttgtgcattttagttgcagctttagtgaacagttctaaaatcatcagctggatgttgattcttgttttggaacttctttag

Basic information

species Oryza sativa
transcript LOC_Os03g22870.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g22870.4 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G150834_T01 (Zea mays), 5'ss of exon 7
GCTCGTGTTAGAGCATTAATGTACTTCAATCATAGTGGCTACAAACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggacaccacccttcgacata----tattt---ttactgcagttgtgcatttt--agttgcagctttagtgaacagttctaaaatcatcagctggatgttgattcttgttttggaacttctttag
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GTCCGAGCTAGAGCCTTAATGTACTTCAACTATAGTGGCTACAAACTCCAACATCACCCTTTGGAACATCTATCAGGAATCCTGATGATCGAGgtaatcttactgtaaagtgtaaagtagaaccatttgatcaactactgatgagcatttggaagttgttg-tttgctgaacc-tcaaaaggttcagaaccgattatctgaagctttattggcaaacgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88557780|gb|CI488214.1|CI488214
EST:     ACACATTTATCAGAAATCCTAATGATCGAG                         GAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
genomic: ACACATTTATCAGAAATCCTAATGATCGAGgtacgcggac ... acttctttagGAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
EST: gi|88553657|gb|CI483785.1|CI483785
EST:     CACCCTTTGACACATTTATCAGAAATCCTAATGATCGAG                         GAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
genomic: CACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggac ... acttctttagGAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
EST: gi|88540184|gb|CI470210.1|CI470210
EST:     AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAG                         GAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
genomic: AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggac ... acttctttagGAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
EST: gi|88530866|gb|CI459292.1|CI459292
EST:     AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAG                         GAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
genomic: AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggac ... acttctttagGAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
EST: gi|88249568|gb|CI249417.1|CI249417
EST:     AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAG                         GAGCTGGACCTGGAAACTCTTTGTAGATTAT-TGGACTTGAAATTAGCAAC
genomic: AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggac ... acttctttagGAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
EST: gi|88532887|gb|CI461334.1|CI461334
EST:     AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAG                         GAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
genomic: AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggac ... acttctttagGAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
EST: gi|88225145|gb|CI225061.1|CI225061
EST:     AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAG                         GAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
genomic: AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggac ... acttctttagGAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
EST: gi|88550116|gb|CI480064.1|CI480064
EST:     CTTCNACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAG                         GAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
genomic: CTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggac ... acttctttagGAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
EST: gi|86497041|gb|CI139674.1|CI139674
EST:     AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAG                         GAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
genomic: AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggac ... acttctttagGAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
EST: gi|88964282|gb|CI045475.1|CI045475
EST:     AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAG                         GAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC
genomic: AACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAATGATCGAGgtacgcggac ... acttctttagGAGCTGGACCTGGAAACTCTTTGTAGATTATGTGGACTTGAAATTAGCAAC