1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTGCATGGCTTCTCTTTCTGCCATGATTCAGCTTGAACTTCCTCATATCAACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttatttcatttctcctttatttaaagattcaaccatcctgctttgtattaatctcttgatgttttctag
species | Oryza sativa |
transcript | LOC_Os03g21914.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|86259754|gb|CI065627.1|CI065627
genomic: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|163929298|gb|EG711035.1|EG711035
genomic: AAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|88239119|gb|CI240281.1|CI240281
genomic: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: GACCTGGTCGCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|27546018|gb|CA764157.2|CA764157
genomic: GACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|58679583|gb|CK068270.1|CK068270
genomic: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: GGTCTCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|33679512|gb|CF307751.1|CF307751
genomic: GGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|86886652|gb|CI312537.1|CI312537
genomic: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|58663098|gb|CK051784.1|CK051784
genomic: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: CTGGTCTCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|44673938|gb|CR287372.1|CR287372
genomic: CTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|89179770|gb|CI044049.1|CI044049
genomic: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|8857451|gb|AU094769.1|AU094769
genomic: AAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|218503197|gb|FG958153.1|FG958153
genomic: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAGGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATEST: gi|58671472|gb|CK060158.1|CK060158
genomic: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGAT
EST: AACATTCTTTCAAAGATGGACCTGGTCTCCAACAAAAAAGATGTGGAAGA GTATCTGAATCCAGAGGCGCAGGTTCTC
genomic: AACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttat ... tgttttctagGTATCTGAATCCAGAGGCGCAGGTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCATGGCTTCTCTTTCTGCCATGATTCAGCTTGAACTTCCTCATATCAACATTCTTTCAAAGATGGACCTGGTCGCCAACAAAAAGGATGTGGAAGAgtatgtttatttcatttctcctttatttaaagattcaaccatcctgctttgtattaatctcttgatgttttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA