1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGgtggatcttactaaactacactagacagaccatcatcatcattctgtttgcttattattcttgcagttagctttcatgatttgatgcacatagaagctgaaaaggttgggctgcttcagtggctcatggctttcatttgatatggatattctgcag
species | Oryza sativa |
transcript | LOC_Os03g21140.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAG CTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCEST: gi|58659366|gb|CK048046.1|CK048046
genomic: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGgtggatctta ... tattctgcagCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTC
EST: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAG CTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCEST: gi|58653647|gb|CK042327.1|CK042327
genomic: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGgtggatctta ... tattctgcagCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTC
EST: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAG CTTGGAGCACAATTTGCCGGAGAGCCCGTTTGCTTCGCCGACTAAGTCCTCEST: gi|86494717|gb|CI137350.1|CI137350
genomic: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGgtggatctta ... tattctgcagCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTC
EST: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAG CTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCEST: gi|218489381|gb|FG965234.1|FG965234
genomic: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGgtggatctta ... tattctgcagCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTC
EST: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAG CTTGGAGCACAATTTGCCGGACAGCCCGATTGCTTCGCCGACTAAGTCCTCEST: gi|86480759|gb|CI123392.1|CI123392
genomic: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGgtggatctta ... tattctgcagCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTC
EST: CTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAG CTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTCEST: gi|218490471|gb|FG964032.1|FG964032
genomic: CTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGgtggatctta ... tattctgcagCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTC
EST: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAG CTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTC
genomic: AAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGgtggatctta ... tattctgcagCTTGGAGCACAATTTGCCGGACAGCCCGTTTGCTTCGCCGACTAAGTCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACAGGTTACTTCACAGAAGAGAGGAAAATGGTCAACGGAGGAGGTGATAAGGAAGAATCTGCTGGTGAGGCGAGCCTGAATGCTGATAGCGACCAAAGgtggatcttactaaactacactagacagaccatcatcatcattctgtttgcttattattcttgcagttagctttcatgatttgatgcacatagaagctgaaaaggttgggctgcttcagtggctcatggctttcatttgatatggatattctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT