1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTTGCAAGCTTGGAGCAAGAGATCAATAAAGCTCGCCAACAAgtaagtttttcgtgcttgatgttgttaagtttcagtcgactgcatttttttgcttcactgtcttagatggtagctataaatgtcacctggatattgtactgcag
species | Oryza sativa |
transcript | LOC_Os03g20310.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCTGAAACTTGCAAGCTTGGAGCAAGAGATCAATAAAGCTCGCCAACAA GGAATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATEST: gi|29622238|gb|CB627249.1|CB627249
genomic: AGCTGAAACTTGCAAGCTTGGAGCAAGAGATCAATAAAGCTCGCCAACAAgtaagttttt ... tgtactgcagGGAATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAAT
EST: AGCTGAAACTTGCAAGCTTGGAGCAAGAGATCAATAAAGCTCGCCAACAA GGAATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATEST: gi|58592490|gb|CF990798.1|CF990798
genomic: AGCTGAAACTTGCAAGCTTGGAGCAAGAGATCAATAAAGCTCGCCAACAAgtaagttttt ... tgtactgcagGGAATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAAT
EST: AGCTGAAACTTGCAAGCTTGGAGCACGAGATCAATAAAGCTCGCCCACAA GGAATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGEST: gi|112786792|gb|EE591448.1|EE591448
genomic: AGCTGAAACTTGCAAGCTTGGAGCAAGAGATCAATAAAGCTCGCCAACAAgtaagttttt ... tgtactgcagGGAATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTG
EST: AAGCTTGGAGCTAGAGATCAATAAAGCTCGCCAACAA GGAATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAAT
genomic: AAGCTTGGAGCAAGAGATCAATAAAGCTCGCCAACAAgtaagttttt ... tgtactgcagGGAATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATATGTACAACAATTAGAGAGCAGTAAGCTGAAACTTGCAAGCTTGGAGCAAGAGATCAATAAAGCTCGCCAACAAgtaagtttttcgtgcttgatgttgttaagtttcagtcgactgcatttttttgcttcactgtcttagatggtagctataaatgtcacctggatattgtactgcag
- - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA