Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCTGGTGGGGGTCATTGATGAGTATTTTGATGGTTATTACACTGAGGAAATGATTGAATCTCAGgtacttcttaattcatgatacatgtaatgtttcccaaaatcctcgttaatgttactgcccgtttacag

Basic information

species Oryza sativa
transcript LOC_Os03g17540.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G095868_T03 (Zea mays), 5'ss of exon 7
GGCTCTGGTGGGGGTCATTGATGAGTATTTTGATGGTTATTACACTGAGGAAATGATTGAATCTCAGgtacttcttaattcatg-------atacatgtaatgtttccc---aaaatcctcgttaatgttactgcccgtt-tacag
|||| | || ||||| |||||||| ||||||||||| || |||||||| |||||||||||||| ||||||||| | |||| |||       || |||| | | ||  ||    ||    |     ||||| |||| |  |  ||||
GGCTTTAGTAGGGGTTATTGATGATTATTTTGATGGATACTACACTGAAGAAATGATTGAATCACAGgtacttttgaatttatggatcttgatgcatgcactcttgtccttggaacatttgaactatgttgctgctcaatacacag

upper sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 7
GGCTCTGGTGGGGGTCATTGATGAGTATTTTGATGGTTATTACACTGAGGAAATGATTGAATCTCAGgtacttcttaattcatg-------atacatgtaatgtttccca---aaatcctcgttaatgttactgcccgtt-tacag
|||  | || ||||| |||||||| ||||||||||| || |||||||| ||||||||||||||||||||| || | || |  ||       || |||| | | ||| |||   ||    |     ||||| |||| |  |  ||||
GGCCTTAGTAGGGGTTATTGATGATTATTTTGATGGATACTACACTGAAGAAATGATTGAATCTCAGgtagttttgaagttgtgggtcttgatgcatgcactcttttccatggaacatttgaactatgttgctgctcaatacacag

upper sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA10G05490.1 (Glycine max), 5'ss of exon 8
GGCTCTGGTGGGGGTCATTGATGAGTATTTTGATGGTTATTACACTGAGGAAATGATTGAATCTCAGgtacttcttaattcatgatacatgtaatgtttcccaaaat----cctcgttaatgttactgcccgt-ttacag-------------------------------------------------------------------------
|||  | |  ||  | |||||||| |||||||  || ||||| |||||||| |||||||||||||| ||| |  | || |    ||   | |    |||   ||||     | |  || ||  |  | |  |  | |||                                                                          
GGCATTTGCTGGCATTATTGATGAATATTTTGCAGGCTATTATACTGAGGATATGATTGAATCTCAAgtaatgatcaagtttctatctttttttctttttaaaaaaggacacattctttatcctgtttcttgagtcacatgtcttttggataattgtagtattaaggtacttgtaattctctttgccaatgatggaagcttttaatgtgccag

upper sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT2G37290.1 (Arabidopsis thaliana), 5'ss of exon 7
GGCTCTGGTGGGGGTCATTGATGAGTATTTTGATGGTTATTACACTGAGGAAATGATTGAATCTCAGgtacttcttaattcatgatacatgtaatgtttcccaaaatcctcgttaatgttactgcccgtttacag------------------
| || |||| ||| | |||||||| ||||||||||| || || ||||| |||||||| ||||||||||||    || || ||  |  | | | ||  || |         |   | |  ||      |   |  |                  
GACTTTGGTTGGGATAATTGATGATTATTTTGATGGCTACTATACTGAAGAAATGATAGAATCTCAGgtaacagttcatccaaaaggcttctgattatttctttttcttacaacatttctagaaagtgaccattgtgaatctacttctcttag