1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CTTCTTAATGTGAGCACAAATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAGgtacagtgctgccacaaccaaactatggttgagtgactgtactaaactagtaggctaacctagtacaatttcatctgacgcttgggttttgacaatgcag
species | Oryza sativa |
transcript | LOC_Os03g17120.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAG GAGGGCANCTTGTAAATTCAEST: gi|29613226|gb|CB618239.1|CB618239
genomic: ATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAGgtacagtgct ... gacaatgcagGAGG-CA-CTTGTAAATTCA
EST: ATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAG GAGGCACTTGTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCCEST: gi|218494800|gb|FG943469.1|FG943469
genomic: ATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAGgtacagtgct ... gacaatgcagGAGGCACTTGTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCC
EST: ATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAG GAGGCACTTGTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCCEST: gi|29670993|gb|CB667268.1|CB667268
genomic: ATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAGgtacagtgct ... gacaatgcagGAGGCACTTGTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCC
EST: ATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAG GAGGCACTTGTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCC
genomic: ATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAGgtacagtgct ... gacaatgcagGAGGCACTTGTAAATTCACTTCATAGACTTGTGGGCTCACTGTCTTCATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTTAATGTGAGCACAAATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAGgtacagtgctgccacaaccaaactatggttgagtgactgtactaaactagtaggctaacctagtacaatttcatctgacgcttgggttttgacaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG