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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcag

Basic information

species Oryza sativa
transcript LOC_Os03g16980.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 6
ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcag
|||||||||||||| ||||| || |||||||||||||| || ||||| |||||||||||||||||||  |||||  |   ||||| ||| | |  |||   ||  || ||| |||  |   | | |  | |    ||||| ||| | |||||
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTGGGCCTTGCAAAGAGAGTTGGAGCTAGgtcagtgttcatc--atgct-attgattcttccaccgc--ctcatgtgaaaaactcagttacagaa----tttattttgaattgcag

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 12
ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcag
|||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||||  |||||  |   ||||  ||| | |  |||   ||  || ||| |||  |   | | |  | |  | |||   ||| | |||||
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAGgtcagtgttcatc--atgcc-attgattcttccagcgc--ctcatgtgaaaaactcagttactgaatttattt---ttgaattgcag

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 5
ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcag
|||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||||   ||||  |   ||||  ||| | |  |||   ||  || ||| |||  |   ||| |  | |  | |||   ||| | |||||
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAGgtcattgttcatc--atgcc-attgattcttccagcgc--ctcatgtgaaaaactcaattacagaatttattt---ttgaattgcag

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 3
ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcag
|||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||| |||||||||  |||||  |   ||||  ||| | |  ||    ||  || ||| |||  |   | | |  | |  | |||   ||| | |||||
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTAGAGCTAGgtcagtgttcatc--atgcc-attgattcttctagcgc--ctcatgtgaaaaactcagttacagaatttattt---ttgaattgcag

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G382038_T01 (Zea mays), 5'ss of exon 7
ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcag
|||||||||||||| ||||| || |||||||||||||| |||||||| |||||||||||||||||||  |||||  |   ||||  ||| | |  ||| | ||  || ||| |||  |   | | |  | |  | |||   ||| | |||||
ACCATCAAGACAAATGTTATTGGTACCCTGAACATGCTAGGACTTGCAAAGAGAGTTGGAGCTAGgtcagtgttcatc--atgcc-attgattcttccaacgc--ctcatgtgaaaaactcagttactgaatttattt---ttgaattgcag

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 6
ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtg--ttttttt-----aatgctgatt--aacttgtcctatgcaacttatgagaactatata-------atgaagggaggtttttatgttgtactgcag
|| || |||||||| || || || || |||||||||||||| ||||||||| ||||||| || ||||||||   || | ||     |||| | |||  | ||| |   || ||  |  |    | | | |         | |      ||| |||| || |   ||||
ACAATAAAGACAAATGTGATTGGTACACTGAACATGCTTGGGCTTGCCAAGCGAGTTGGGGCAAGgttggtaaattgtctttggaaaatgataatttcagcttctatcat-cagttggtctttattctttttcttcttgttagtcttagttcttattttat-tggcag

upper sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv13s0019g00840.t01 (Vitis vinifera), 5'ss of exon 6
ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactat----ataatgaagggaggtttttatgttgtactgcag
|| || |||||||| || || || ||| |||||||| | || |||||||||||||||||||| |||||||    |  ||   ||   |    ||||   ||     |||| |  |  ||     |  |      ||  | | ||  ||  || |||
ACAATAAAGACAAATGTGATTGGCACCTTGAACATGTTGGGGCTTGCCAAGAGAGTTGGAGCCAGgttggaaactactt---gcccgtctctttgttgcattttgtttataaacataattctggtcttacttatagcatgtaataatg-gctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58677155|gb|CK065842.1|CK065842
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|33680606|gb|CF308845.1|CF308845
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58678023|gb|CK066710.1|CK066710
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|30229035|gb|CB966926.1|CB966926
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58665123|gb|CK053809.1|CK053809
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACT
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACT
EST: gi|163923367|gb|EG711100.1|EG711100
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|25800080|gb|CA756041.1|CA756041
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGAATC-GCTTGAGCACC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGA-TCCGCTTGAGCACC
EST: gi|38478163|gb|CF962296.1|CF962296
EST:     CAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCTGCTTGAGCACC
genomic: CAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC-GCTTGAGCACC
EST: gi|163927504|gb|EG710716.1|EG710716
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|30226568|gb|CB964460.1|CB964460
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|313080404|gb|HO213412.1|HO213412
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|33675428|gb|CF303667.1|CF303667
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58601617|gb|CK012145.1|CK012145
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGAC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGAC
EST: gi|58682312|gb|CK070999.1|CK070999
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTC
EST: gi|29668646|gb|CB664921.1|CB664921
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|428184|gb|D24332.1|D24332
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGNGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|29637729|gb|CB642738.1|CB642738
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58672962|gb|CK061648.1|CK061648
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|30226636|gb|CB964528.1|CB964528
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58686439|gb|CK075126.1|CK075126
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58659240|gb|CK047920.1|CK047920
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58666035|gb|CK054721.1|CK054721
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58664219|gb|CK052905.1|CK052905
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTCGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|38476842|gb|CF960975.1|CF960975
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58664364|gb|CK053050.1|CK053050
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58659773|gb|CK048453.1|CK048453
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58590735|gb|CF989043.1|CF989043
EST:     GTTATCGGAACCCTGAA-ATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58672357|gb|CK061043.1|CK061043
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC
EST: gi|58655602|gb|CK044282.1|CK044282
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCC
EST: gi|33380802|gb|CF196145.1|CF196145
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|30228342|gb|CB966233.1|CB966233
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|33813747|gb|CF332760.1|CF332760
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCCGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|58656016|gb|CK044696.1|CK044696
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|29668686|gb|CB664961.1|CB664961
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
EST: gi|14981678|gb|BI306356.1|BI306356
EST:     GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAG                         GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC
genomic: GTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgttt ... tgtactgcagGATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCATCAAGACAAACGTTATCGGAACCCTGAACATGCTTGGACTTGCCAAGAGAGTTGGAGCTAGgttggtgtttttttaatgctgattaacttgtcctatgcaacttatgagaactatataatgaagggaggtttttatgttgtactgcag

- - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT