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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTCATGCTCCTTCGATGAGTGAAGAAGAAATAAATGCTCTTCCTGTATTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAAAGgtaagatgtattatccttttggctacattttttagctggcatagcaaacgcatgataagtctacaactgccttccatctctgataagtaaccaaccatataattccgaatttgtctactttgtatgggatgtaactaaccatttaattcttttgattctatag

Basic information

species Oryza sativa
transcript LOC_Os03g16570.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16570.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G337425_T03 (Zea mays), 5'ss of exon 5
GCCCTCATGCTCCTTCGATGAGTGAAGAAGAAATAAATGCTCTTCCTGTATTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAAAGgtaagat-gtattatccttttggctacattttttagctggcatagcaaacgcatgataagtctacaactgccttccatctctgataagtaaccaaccatataattccgaatttgtctactttgtatgggatgtaactaaccatttaattcttttgattctatag
|||| |||||||| || ||||||||||||||||||||| |||||||||| |||||||| || ||||||||||| ||| |   | || ||  |||||||||||||    | ||| |||||| || |  |||| ||      |||| ||    |||    |||      | |  || |   ||  | |  | |||||| || |||||| ||| | |          |   || |||| |     | ||||  || |  | | ||||
GCCCACATGCTCCATCTATGAGTGAAGAAGAAATAAATTCTCTTCCTGTCTTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccgaattgtcctttgggttg-atttgtt------catatcac---catatcgagttggttccagtatttcccatc-aacacatgaccaac-atttaattctgaaatgg--------agacatgaagtaatt--ttttctaatgtttgttttccaatag

upper sequence: LOC_Os03g16570.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G492252_T02 (Zea mays), 5'ss of exon 5
GCCCTCATGCTCCTTCGATGAGTGAAGAAGAAATAAATGCTCTTCCTGTATTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAAAGgtaagatgtattatccttttggctacattttttagctggcatagcaaacgcatgataagtcta--caactgccttccatctctgataagtaaccaaccatataattccgaatttgtctactttgtatgggatgtaactaaccatttaattcttttgattctatag------
|||  |||| |||||| ||||||||||||||||||||| |||||||||| |||||||| || || |||||||| ||||||| |||| ||  ||||||||||||||| | |||||||||| ||     || || |  ||||          |||   |||| |   | | |  || |||||    | || | ||||| ||| |||||| ||||| |   || | |  |    |||  |||   || |  ||||   || | | |        
GCCTGCATGTTCCTTCTATGAGTGAAGAAGAAATAAATTCTCTTCCTGTCTTCAAATATAAAGTCCAGGCACAGCAGGGAAATGCCCCTGCCCGAAAAAGgtaagacgaattatcctttgggtcgatttgttcatatggc----------cataccaagtttgttccagtatctcccatcatcaacaaatgaccaaacatttaattctgaattggag-acatggattaatttgtctcta-tgatgtgtttctaacgaatgtttttcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86499240|gb|CI141873.1|CI141873
EST:     GGAAGTGCCTCTTTCCGAAAAAG                         TGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG
genomic: GGAAGTGCCTCTTTCCGAAAAAGgtaagatgta ... gattctatagTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG
EST: gi|218498707|gb|FG952314.1|FG952314
EST:     TTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAAAG                         TGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGAA
genomic: TTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAAAGgtaagatgta ... gattctatagTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAGAA
EST: gi|87009256|gb|CI276570.1|CI276570
EST:     TCAGGGAAGTGCCTCTTTCCGAAAAAG                         TGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG
genomic: TCAGGGAAGTGCCTCTTTCCGAAAAAGgtaagatgta ... gattctatagTGATGGACCATCTCAACCATCTGTTTCTTCTACTGAATCTGGCAATGAG