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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGATAGAGTACAGAGCCCATCCATTCTGGGGACAGAAGTATTGTCCTTTGCATGAGCATGATAGAACACCTCGTTGCTGTAGCTGTGAGAAAATGGAGgtttgtactgcctttcttgcatatgatgaatgtatttcatgcttacaaatacacattaaaaatattattagtttctctattttctcggcaaaatttctataaattgcaattgtactgatttgtcagtttaaaatatgagttcgtacttaagacattttgtgaatccctgcag

Basic information

species Oryza sativa
transcript LOC_Os03g16090.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g16090.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G151934_T02 (Zea mays), 5'ss of exon 7
TTTGATAGAGTACAGAGCCCATCCATTCTGGGGACAGAAGTATTGTCCTTTGCATGAGCATGATAGAACACCTCGTTGCTGTAGCTGTGAGAAAATGGAGgtttgtactgcctttcttgcatatgatgaatgtatttca-tgcttacaaatacacattaaaaatattattagtttctctattttctcggcaaaatttctataaatt-gcaattgtactgatttgtcagtttaaaatatgagttcgtacttaagacattttgt------gaatccctgcag
  ||||||||||||||||||| || |||||||| ||||||||||| |||| ||||||||| || || || || |||||||| |||||||||||||||||||| |  |    ||       | || ||   | |  | |  ||   || | ||   ||  | |  |  ||  |||    |    |   ||| |  | | |  ||| | |   ||  | ||| |  |   |  ||   ||   |||      |   | |||| |      | |   ||||||
CCTGATAGAGTACAGAGCCCACCCGTTCTGGGGCCAGAAGTATTGCCCTTCGCATGAGCACGACAGGACGCCACGTTGCTGCAGCTGTGAGAAAATGGAGgtataaat--actaggaaaaaaataatatttatcatacgctgtgcactattatgaatccacacgaaaat-ggttcgcatgcagttctggctacttgttttcaaactagtccttccattgactgat---tcaaaggcatttcttcaccacaagttctttttttccggttgtaattctgcag

upper sequence: LOC_Os03g16090.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G160198_T01 (Zea mays), 5'ss of exon 7
TTTGATAGAGTACAGAGCCCATCCATTCTGGGGACAGAAGTATTGTCCTTTGCATGAGCATGATAGAACACCTCGTTGCTGTAGCTGTGAGAAAATGGAGgtttgtactgcctttcttgcatatgatgaatgtatttcatgcttacaaatacacattaaaaata--ttattagtttctctatttt-ctcggcaaaatttctata-aattgcaattgtactgatttgtcagtttaaaatatgagttcgtacttaagacattttgtgaatccctgcag
      ||||||||||||||| || |||||||| ||||||||||| |||| ||||||||  || || || || |||||||| ||||||||||||||||||||      | |   |  |  |||  |  |||||  |    |       |  |   || ||| ||  || |   || |   ||  |  ||      ||  || |    |||  ||||| | |                                                       
------AGAGTACAGAGCCCACCCGTTCTGGGGCCAGAAGTATTGCCCTTCGCATGAGCGCGACAGGACGCCACGTTGCTGCAGCTGTGAGAAAATGGAGGTACA-Ggtacagatactagatagaa--aatgtggtcgcagtccgatcactcgttttcaaactaggttgtacattgcctgatcatattcaagggcatcacttttcggttgtgattgtgcag-------------------------------------------------------

upper sequence: LOC_Os03g16090.1 (Oryza sativa), 5'ss of exon 7
lower sequence: EFJ07250 (Selaginella moellendorffii), 5'ss of exon 3
TTTGATAGAGTACAGAGCCCATCCATTCTGGGGACAGAAGTATTGTCCTTTGCATGAGCATGATAGAACACCTCGTTGCTGTAGCTGTGAGAAAATGGAGgtttgtactgcctttcttgcatatgatgaatgtatttcatgcttacaaatacacattaaaaatattattagtttctctattttctcggcaaaatttctataaattgcaattgtactgatttgtcagtttaaaatatgagttcgtacttaagacattttgtgaatccctgcag
  ||||||||||| | || ||||| ||||||||||| |||||||| || ||||||||  | ||    || ||||| || || || ||||||  | |||||||  |  | |  |||  ||| | ||  || ||  |  |   |      | | ||||  |                                                                                                                 
CCTGATAGAGTACCGCGCACATCCTTTCTGGGGACAAAAGTATTGCCCCTTGCATGAAAAGGACTCCACCCCTCGATGTTGCAGTTGTGAGCGAGTGGAGgtaaggcccgtttttactgcct-tgtcgactgcttgacggccggggtgacatacatgcag----------------------------------------------------------------------------------------------------------------