1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CTTGGTGCTAATGCTATCCTGGCTGTCTCACTTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggagaactcgttttatatttttatatttgaatgcacacagtttgttctttccactaaccagttttcttataccattacgtgccttctatattgcag
species | Oryza sativa |
transcript | LOC_Os03g14450.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAA CACATTGCTAACCTTGCTGGTAACAAGCAACTTGGTTTGCCTGTGCCTGCTEST: gi|117233450|gb|CT848145.1|CT848145
genomic: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggaga ... tatattgcagCACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCT
EST: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAA CACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCTEST: gi|5607353|gb|AU076025.1|AU076025
genomic: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggaga ... tatattgcagCACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCT
EST: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAA CACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCTEST: gi|27553945|gb|CA997845.1|CA997845
genomic: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggaga ... tatattgcagCACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCT
EST: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAA CACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCTEST: gi|29678593|gb|CB674868.1|CB674868
genomic: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggaga ... tatattgcagCACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCT
EST: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAA CACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCTEST: gi|58600258|gb|CK010786.1|CK010786
genomic: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggaga ... tatattgcagCACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCT
EST: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAA CACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCTEST: gi|88421393|gb|CI569238.1|CI569238
genomic: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggaga ... tatattgcagCACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCT
EST: TTGCTCTATGCAAAGGCGGAGCTATTATCAAGAAAATTC-GTTGTATTAA CAAATTGGTAAC-TTGGTGGTEST: gi|27553947|gb|CA997847.1|CA997847
genomic: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggaga ... tatattgcagCACATTGCTAACCTTGCTGGT
EST: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAA CACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCTEST: gi|32947868|gb|BP184440.1|BP184440
genomic: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggaga ... tatattgcagCACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCT
EST: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAA CACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCTEST: gi|38565671|gb|CK085124.1|CK085124
genomic: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggaga ... tatattgcagCACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCT
EST: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAA CACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCT
genomic: TTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggaga ... tatattgcagCACATTGCTAACCTTGCTGGTAACAAGCAACTTGTTTTGCCTGTGCCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGTGCTAATGCTATCCTGGCTGTCTCACTTGCTCTATGCAAAGCCGGAGCTATTATCAAGAAAATTCCGTTGTATCAAgtatgggagaactcgttttatatttttatatttgaatgcacacagtttgttctttccactaaccagttttcttataccattacgtgccttctatattgcag
- - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA