1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTTTTCAAAAAGGTCACAGAACCAAATTGCAGTAACAAGTCAGGTGCAACTAAAGGGGACCTCTCCGCCACAAGAACTGTGAAACAGAAAAGAAGAGCAGgttacaatgccatttttcttttggtttgatatggtttagcttactcatattttgtcttatgcaatatgcagtttgtatgttttagcagctaagccttgacaataaaatatattatatgaagaccatatagtgttgagctttcctcacattagttttgagagcagctgacctgtgttttag
species | Oryza sativa |
transcript | LOC_Os03g13790.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAAAGGCGACCTCTCCGCCACAAGAACTGTGAAACAGAAAAGAAGAGCAG GTGGTGTTGTTGCATCTGCTGCATATAAAAAATGGGEST: gi|29618831|gb|CB623843.1|CB623843
genomic: TAAAGGGGACCTCTCCGCCACAAGAACTGTGAAACAGAAAAGAAGAGCAGgttacaatgc ... tgtgttttagGTGGTGTTGTTGCATCTGCTGCATATAAAAAATGGG
EST: TAAAGGGGACCTCTCCGCCACAAGAACTGTGAAACAGAAAAGAAGAGCAG GTGGTGTTGTTGCATCTGCTGCATATAAAAAATGGGAGAGAGCTGCCATGGEST: gi|29617184|gb|CB622196.1|CB622196
genomic: TAAAGGGGACCTCTCCGCCACAAGAACTGTGAAACAGAAAAGAAGAGCAGgttacaatgc ... tgtgttttagGTGGTGTTGTTGCATCTGCTGCATATAAAAAATGGGAGAGAGCTGCCATGG
EST: TAAAGGGGACCTCTCCGCCACAAGAACTGTGAAACAGAAAAGAAGAGCAG GTGGTGTTGTTGCATCTGCTGCATATAAAAAATGGGAGAGAGCTGCCATGG
genomic: TAAAGGGGACCTCTCCGCCACAAGAACTGTGAAACAGAAAAGAAGAGCAGgttacaatgc ... tgtgttttagGTGGTGTTGTTGCATCTGCTGCATATAAAAAATGGGAGAGAGCTGCCATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTTCAAAAAGGTCACAGAACCAAATTGCAGTAACAAGTCAGGTGCAACTAAAGGGGACCTCTCCGCCACAAGAACTGTGAAACAGAAAAGAAGAGCAGgttacaatgccatttttcttttggtttgatatggtttagcttactcatattttgtcttatgcaatatgcagtttgtatgttttagcagctaagccttgacaataaaatatattatatgaagaccatatagtgttgagctttcctcacattagttttgagagcagctgacctgtgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG