1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGGCCTCAGAGCTCAATGTTTGTTGGGATTCTTCTGAACAAGGTTTGCAACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGgtacttatattgacacctttcatttctattgcagcttcaatttatatgtttctgatagctgatgcatatttcaacatgccctgtag
species | Oryza sativa |
transcript | LOC_Os03g13100.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGEST: gi|87034810|gb|CI189434.1|CI189434
genomic: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
EST: CCCATTAAATACAGTCCAAGATGAACACAAGAGTCAGCCTGGTTTATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGEST: gi|89183002|gb|CI003066.1|CI003066
genomic: CCAATTAAATACAGT-CAAGATGAACACAAGAGTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
EST: AGTCAGCCTGGTTTATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACCATGEST: gi|89163691|gb|CI100581.1|CI100581
genomic: AGTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
EST: ACCAATTAAATACAGTCGAGATGAACACAAGAGTCAGCCTGGTTNATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGEST: gi|89161846|gb|CI102194.1|CI102194
genomic: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
EST: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGEST: gi|29622042|gb|CB627053.1|CB627053
genomic: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
EST: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTTTAATAACAATGEST: gi|89183078|gb|CI003142.1|CI003142
genomic: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
EST: AGAGTCAGCCTGGTTTATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGEST: gi|88848181|gb|CI086703.1|CI086703
genomic: AGAGTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
EST: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGEST: gi|86479393|gb|CI122026.1|CI122026
genomic: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
EST: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGEST: gi|89174178|gb|CI042071.1|CI042071
genomic: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
EST: GTCAGCCTGGTTTATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGEST: gi|88228695|gb|CI228175.1|CI228175
genomic: GTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
EST: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTG GTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
genomic: ACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGgtacttatat ... tgccctgtagGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCCTCAGAGCTCAATGTTTGTTGGGATTCTTCTGAACAAGGTTTGCAACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGgtacttatattgacacctttcatttctattgcagcttcaatttatatgtttctgatagctgatgcatatttcaacatgccctgtag
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