Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaaacaaaactattttctatatctggtctggaatgcagaattatcatgcaagagctacctttaaaccaccaacctttgcaatttaacag

Basic information

species Oryza sativa
transcript LOC_Os03g11440.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 5
GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaaacaaaactat-tttctatatctggtctgga----atgcagaattatcatgcaagagctacctttaaaccaccaacctttgcaatttaacag-
||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||     ||| | |   || ||| ||| |    | | |      |   | |||  |||  |   |||  || |  |||| || |    | | | |   || 
GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaaatatacacatctttttatgtaaaattttggtcctgtttggcattggcataaagctgctggctgt--accagcagctacagtactctgttagg

upper sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G073498_T02 (Zea mays), 5'ss of exon 5
GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgta-aaataaaacaaaactattttctatatctggt-ctgga---atgcagaattatcatgcaagagctacctttaaaccaccaacctttgcaatttaacag--
||| |||||||||||||||||||||||||| ||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |       ||   ||| ||| |    | ||||     | | |  | | | |  ||| ||| |       |    |      |||  |  ||||  
GTTTTATGTGGTCTTCATGCTGTCAGCTTGCGCTCTGTTCTCAAAAACGTGGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacaaacagctttgcacatctttttatgtaaaattctgggcctgttcggtttcagcgta-aagtgctgcgaagctgctgttacagccagcagct--acagta

upper sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA12G35990.1 (Glycine max), 5'ss of exon 6
GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaaacaaaactattttctatatctggtctggaatgcagaattatcatgcaag--agctacctttaaaccaccaacctttgcaatttaacag----
||||||| | || || ||||| |||||||||||  | |||||||| |||||||||||||| ||||||||||| || |  |||||||| || ||||| ||||||  |     ||     |||||  ||| |   ||   | ||  ||  |||     |||  |   | |   | |  | | |   |||   |||| |      
GTTCTATCTTGTGTTTATGCTTTCAGCTTGTGCCTTGTTCTCAAAAACATGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGgtacgaactggcat--tcattttgcataccatttccctattgacgatatatttcttaagtaaagcagcagaatattagctaggcttgggttttagccatctt

upper sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA12G17950.1 (Glycine max), 5'ss of exon 6
GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaaacaaaactattttctatatctggtctggaatgcagaattatcatgcaagagctacctttaaaccaccaacctttg----caatttaacag--
 |||||  | || || ||| ||||||| |||||  | ||||| || || ||||||||||| ||||||||||| || |  |||||||| || ||||||||||||  |   |   |  |  |||   | || |  | |  | |      || |  || |   || || ||   ||    |      |       ||| |||   
ATTCTACCTTGTGTTTATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCAAAGCAGCTCAAGgtattactgactcacgcattttgggaaatttattatttattattt--ttgttttgtatctgcaactttagtacttatatatagcgagcctgttttcacatca

upper sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA13G34370.1 (Glycine max), 5'ss of exon 6
GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgta--aaataaaacaaaact---attttctatatctggtctggaatgcagaattatcatgcaagagctacctttaaaccaccaacctttgcaatttaacag
||||||| | || || ||||| ||||| |||||  | ||||| || |||||||||||||| ||||||||||| || || |||||||| || ||||| ||||||   | ||  |   |  |   ||  ||| |  |   |    |    | | || | | | || |||  |     ||     |  |||||   ||||    
GTTCTATCTTGTGTTTATGCTTTCAGCCTGTGCCTTGTTCTCTAAAACATGGATTGAAGTCTCTGGTTCATCTGCTAAAGATGTTGCCAAGCAGCTTAAGgtactgactagcattgattttgtatactcttttccccattgacatgatatatttcttaagtaa-agcagcaaaataattgttaggctttgggttttagagc

upper sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv00s0551g00030.t01 (Vitis vinifera), 5'ss of exon 3
GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgta-aaataaaacaaaactattttctatatctggtctggaatgcagaattatcatgcaagagctacctttaaaccaccaacctt----tgcaatttaacag--
 |||||| |  |||| ||| || | || ||||| || ||||||||||| ||||||||||||||||| || || || |  ||||| ||||| ||||||||||||  |||        |||||  | | | |    | ||  || |    ||   |     | |||    || ||         ||    ||      ||     
CTTCTATCTAATCTTTATGTTGGCTGCCTGTGCACTTTTCTCAAAGACTTGGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattctttgggactatact-tgtcttaattttgtcatcccc--ttcctacttttgtgctgttattgaaatgagggttttgttttgggggccaaggatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3762742|gb|AU029494.1|AU029494
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTC-AG                         GAGCAACAAATGGTGATGCCCAGGCCCATCGTGAGTCGAATTTACAGAAAG
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATG-CCAGG-CCATCGTGAGTCGAATTTACAGAAAG
EST: gi|29627508|gb|CB632519.1|CB632519
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88907158|gb|CI089952.1|CI089952
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|86519507|gb|CI159713.1|CI159713
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|86435779|gb|CI107012.1|CI107012
EST:     TGTTGCTATACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: TGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88837107|gb|CI078467.1|CI078467
EST:     AGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: AGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88839105|gb|CI378029.1|CI378029
EST:     AACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: AACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|33666143|gb|CF297110.1|CF297110
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88848102|gb|CI086624.1|CI086624
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|27577737|gb|CB000432.1|CB000432
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88991636|gb|CI019814.1|CI019814
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|29616183|gb|CB621195.1|CB621195
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|86600394|gb|CI356151.1|CI356151
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|29627509|gb|CB632520.1|CB632520
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88831453|gb|CI083847.1|CI083847
EST:     GATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|86862384|gb|CI345500.1|CI345500
EST:     AAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: AAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|86425324|gb|CI070421.1|CI070421
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|86260506|gb|CI066379.1|CI066379
EST:     GATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|15851049|gb|BI799325.1|BI799325
EST:     ATCTGGTTCATCAGCACAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: ATCTGGTTCATCAGCA-AAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88247484|gb|CI247333.1|CI247333
EST:     TGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: TGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88265008|gb|CI368782.1|CI368782
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88841953|gb|CI081209.1|CI081209
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88840054|gb|CI079508.1|CI079508
EST:     CTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: CTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88840619|gb|CI080073.1|CI080073
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAA                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88959632|gb|CI002242.1|CI002242
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|89162101|gb|CI103637.1|CI103637
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|27554203|gb|CA998103.1|CA998103
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGA-
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88962546|gb|CI097698.1|CI097698
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|29665157|gb|CB661432.1|CB661432
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|33796315|gb|CF324025.1|CF324025
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|9864956|gb|AU100706.1|AU100706
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88290799|gb|CI542510.1|CI542510
EST:     AACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: AACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|86490193|gb|CI132826.1|CI132826
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|66914888|gb|CX101736.1|CX101736
EST:     GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: GGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88219925|gb|CI219485.1|CI219485
EST:     TGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: TGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
EST: gi|88249276|gb|CI249125.1|CI249125
EST:     ATGTTGCTAAACAGCTCAAG                         GAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA
genomic: ATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 115

GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaa ... aatttaacagGAGCAACAAATGGTGATGCCAGGCCATCGTGAGTCGAATTTACAGAAAGAATTGAACAGATACATCCCTACAGCTGCTGCATTTGGTGGAGTCTGCATTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaaacaaaactattttctatatctggtctggaatgcagaattatcatgcaagagctacctttaaaccaccaacctttgcaatttaacag

- - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA