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GGATCTTTCCTTTAATTCTCTTGCTGGTGACCTACCACAAGGGTTCACATCATTGTCAAGCCTGAAGAAATTgtaagaaaatgattgtttttctctcatagatatgtctttttggagtgacatgcctgtaatcccatactcgttcttctcag
species | Oryza sativa |
transcript | LOC_Os03g08550.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCTGGTGACCTACCACAAGGGTTCACATCATTGTCAAGCCTGAAGAAATT ATATCTGCAGNACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCTEST: gi|58652520|gb|CK041200.1|CK041200
genomic: GCTGGTGACCTACCACAAGGGTTCACATCATTGTCAAGCCTGAAGAAATTgtaagaaaat ... ttcttctcagATATCTGCAGAACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCT
EST: GTCAAGCCTGAAGAAATT ATATCTGCAGAACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCTEST: gi|88386689|gb|CI682838.1|CI682838
genomic: GTCAAGCCTGAAGAAATTgtaagaaaat ... ttcttctcagATATCTGCAGAACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCT
EST: GCTGGTGACCTACCACAAGGGTTCACATCATTGTCAAGCCTGAAGAAATT ATATCTGCAGAACAATCAATTTACTGGTTATATEST: gi|58661405|gb|CK050085.1|CK050085
genomic: GCTGGTGACCTACCACAAGGGTTCACATCATTGTCAAGCCTGAAGAAATTgtaagaaaat ... ttcttctcagATATCTGCAGAACAATCAATTTACTGGTTATAT
EST: GCTGGTGACCTACCACAAGGGTTCACATCATTGTCAAGCCTGAAG--A-- A-AT-T----AACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCTEST: gi|58658124|gb|CK046804.1|CK046804
genomic: GCTGGTGACCTACCACAAGGGTTCACATCATTGTCAAGCCTGAAGAAATTgtaagaaaat ... ttcttctcagATATCTGCAGAACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCT
EST: GCTGGTGACCTACCACAAGGGTTCACATCATGGTC-AGCCTGAAGAAATT ATATCTGCAGAACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCT
genomic: GCTGGTGACCTACCACAAGGGTTCACATCATTGTCAAGCCTGAAGAAATTgtaagaaaat ... ttcttctcagATATCTGCAGAACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCTTTCCTTTAATTCTCTTGCTGGTGACCTACCACAAGGGTTCACATCATTGTCAAGCCTGAAGAAATTgtaagaaaatgattgtttttctctcatagatatgtctttttggagtgacatgcctgtaatcccatactcgttcttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA