1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTAATAAGGCTGCACAGTCTTTAACTGATGCAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAGgtatgccccaaatttaaaaacaagaaatatgtcttacgacctgtgctgtcaattgttatattaatgtgctaattcttcttcttgactgtgcag
species | Oryza sativa |
transcript | LOC_Os03g07080.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAG GATAACATTGCGTTGATTGCAGTTTTAGAAGCTAAGTTTGGTAGCCATGGGEST: gi|58612497|gb|CK040209.1|CK040209
genomic: CAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAGgtatgcccca ... gactgtgcagGATAACATTGCGTTGATTGCAGTTTTAGAAGCTAAGTTTGGTAGCCATGGG
EST: CAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAG GATAACATTGCGTTGATTGCAGTTTTAGAAGCTAAGTTTGGTAGCCATGGGEST: gi|29678434|gb|CB674709.1|CB674709
genomic: CAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAGgtatgcccca ... gactgtgcagGATAACATTGCGTTGATTGCAGTTTTAGAAGCTAAGTTTGGTAGCCATGGG
EST: CAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAG GATAACATTGCGTTGATTGCAGTTTTAGAAGCTAAGTTTGGTAGCCATGGG
genomic: CAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAGgtatgcccca ... gactgtgcagGATAACATTGCGTTGATTGCAGTTTTAGAAGCTAAGTTTGGTAGCCATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAATAAGGCTGCACAGTCTTTAACTGATGCAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAGgtatgccccaaatttaaaaacaagaaatatgtcttacgacctgtgctgtcaattgttatattaatgtgctaattcttcttcttgactgtgcag
- - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA