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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcctctactgatgttcactatcagaactgtctttcacagaactatcagatacatatgtcaacttctagagagtcatataggctaagattttttt...

Basic information

species Oryza sativa
transcript LOC_Os03g03920.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88844161|gb|CI001218.1|CI001218
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|29656527|gb|CB652802.1|CB652802
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|58588836|gb|CF987144.1|CF987144
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88955460|gb|CI091552.1|CI091552
EST:     ACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: ACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|89176589|gb|CI111305.1|CI111305
EST:     CCCAGAGCGAACCCGATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: CCCAGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88590511|gb|CI708279.1|CI708279
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|29662283|gb|CB658558.1|CB658558
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATTTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88955489|gb|CI091581.1|CI091581
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88849094|gb|CI087616.1|CI087616
EST:     CTGGCCCAGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: CTGGCCCAGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88429036|gb|CI689915.1|CI689915
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|55436834|gb|CV731581.1|CV731581
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88590503|gb|CI709368.1|CI709368
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATANTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|86482742|gb|CI125375.1|CI125375
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|157650080|gb|EX449714.1|EX449714
EST:     GCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: GCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|87020032|gb|CI277764.1|CI277764
EST:     AGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88582060|gb|CI699289.1|CI699289
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|86429591|gb|CI076272.1|CI076272
EST:     CCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCTACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: CCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|29678486|gb|CB674761.1|CB674761
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|87007168|gb|CI277243.1|CI277243
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|218483111|gb|FG965896.1|FG965896
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88588980|gb|CI706829.1|CI706829
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|29616126|gb|CB621138.1|CB621138
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|163919662|gb|EG711652.1|EG711652
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|29674370|gb|CB670645.1|CB670645
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88850993|gb|CI096383.1|CI096383
EST:     GCTGGCCCAGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: GCTGGCCCAGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|86500583|gb|CI143216.1|CI143216
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|88591862|gb|CI709918.1|CI709918
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|86413823|gb|CI068030.1|CI068030
EST:     GCTGGCCCAGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: GCTGGCCCAGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|86494120|gb|CI136753.1|CI136753
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
EST: gi|86486868|gb|CI129501.1|CI129501
EST:     AGAGCGAACCCAATCAGGTGCTGGTGCAG                         GCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG
genomic: AGAGCGAACCCAATCAGGTGCTGGTGCAGgtaacttcct ... ttaatgccagGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTG